Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1841
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021487-8|CAB76733.1|  320|Caenorhabditis elegans Hypothetical ...    33   0.19 
Z81568-14|CAB04591.2|  608|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z82077-8|CAB63329.1|  459|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF016445-2|AAC69064.1|  376|Caenorhabditis elegans Serpentine re...    28   5.5  
AC024881-8|AAK71411.2|  318|Caenorhabditis elegans Serpentine re...    28   7.3  
AC024796-11|AAK29890.2|  828|Caenorhabditis elegans Hypothetical...    27   9.6  

>AL021487-8|CAB76733.1|  320|Caenorhabditis elegans Hypothetical
           protein Y45F10B.14 protein.
          Length = 320

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 399 TLMWGCIGLVTVSFILFTSYMFYDALYFTTVFV 497
           TL W  IG++ V  ILF +++ Y ALY T   V
Sbjct: 5   TLYWSVIGVIDVLAILFNAFLIYLALYRTPKMV 37


>Z81568-14|CAB04591.2|  608|Caenorhabditis elegans Hypothetical
           protein K08E3.3a protein.
          Length = 608

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +1

Query: 97  VTSDRLLKAYINCFLDKGRCTPEASDFKKALPDTIATNCGKCT-EKQKANVRKVIKVIQQ 273
           ++S ++L++  +  + K   TP++   + A+  T      K + E       +++ V++ 
Sbjct: 520 ISSPKILRSSFSGAIRKSLSTPDSVKVETAVTVTALFEFAKSSAETMSIEQGEILLVLEH 579

Query: 274 KHSTEWEKLVKKHD 315
            H   W +  KKH+
Sbjct: 580 DHGDGWTRTKKKHN 593


>Z81030-13|CAB02705.2|  358|Caenorhabditis elegans Hypothetical
           protein C01G10.3 protein.
          Length = 358

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 320 RENTVLISTNSF*EAKYLLISYFGLGHTYVGMHRLSN--CFIYIVHFLHVL 466
           REN        F ++ + + S FGL    +  HR     CF ++  F+HVL
Sbjct: 226 RENVAQFFQTVFQDSLFFISSTFGLKLNTIIAHRFWTFFCFTFVWQFIHVL 276


>Z82077-8|CAB63329.1|  459|Caenorhabditis elegans Hypothetical
           protein W09C5.2 protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 454 EVNNINETVTKPMHPHIS 401
           E+NN+NE  + P HPH S
Sbjct: 71  EINNLNEKESAPTHPHPS 88


>AF016445-2|AAC69064.1|  376|Caenorhabditis elegans Serpentine
           receptor, class w protein134 protein.
          Length = 376

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = -1

Query: 666 SRYLMYTISV--NIFVRSPINKKYYKLQFPSTFIAYV 562
           S +L+++++V   + +R+P+N KY +L  PST +  +
Sbjct: 128 STWLLFSVAVIRTLVLRNPMNPKYTELSKPSTALRVI 164


>AC024881-8|AAK71411.2|  318|Caenorhabditis elegans Serpentine
           receptor, class t protein53 protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 305 FTSFSHSVECFCCITLITFLTLAFCFSV 222
           +T+  H++  F  + L +FL + FCF V
Sbjct: 192 YTNIPHTINNFSLVFLTSFLYMFFCFKV 219


>AC024796-11|AAK29890.2|  828|Caenorhabditis elegans Hypothetical
           protein Y48G1C.8 protein.
          Length = 828

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 399 WPKPK*LINKYLAS*KEFVEISTVFSRRIMFLHKFFPFCGMFLLY 265
           W   K L+ +YL +  E +  S   +RR  +L    P  G+F+ +
Sbjct: 399 WAHNKKLLLRYLVNEPELLSQSNCLNRRTPYLPPLIPTTGVFVYF 443


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,067,328
Number of Sequences: 27780
Number of extensions: 285896
Number of successful extensions: 814
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)