Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1840
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    25   5.0  
SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce...    25   6.6  
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    25   6.6  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    24   8.7  

>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +1

Query: 136 YNFYKSKIRSNYFRREFNRYVFWFEILKREIPSLAPTPAIDLNLKDYSFPVYKNYI*F 309
           Y +  S I S  F  +   Y ++   L    PS++ T AIDL++  Y++  Y N + F
Sbjct: 47  YTYSPSGITS--FPLDLQSYTYYTTTLSIGRPSISYTVAIDLDM-PYTWLTYYNVMAF 101


>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 280 FPVYKNYI*FEIQSKRA 330
           +P+YK Y+  E+ SKR+
Sbjct: 63  YPIYKTYLLLELPSKRS 79


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 307 FEIQSKRACNQRRSVTGPLVTVVIAKNLVKLQAN 408
           FE QSK   N +  + GP    +I +N  KL  N
Sbjct: 177 FESQSKSTDNFKELLNGPSKKDIITQNAEKLLRN 210


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 192 PVKFSSKVIGPYFAFVKIVKLANKSFKFSLDVIP 91
           P+K     I PYF+ + ++  +N++F F     P
Sbjct: 276 PIKLHFDKIIPYFSRLTVLTFSNRAFIFPDHTFP 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,687,018
Number of Sequences: 5004
Number of extensions: 31210
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)