Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1840
         (431 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   7.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   7.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.8  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +1

Query: 139 NFYKSKIRSNYFRREFNRYVFWFEILKREIPSLAPTP 249
           N+  +   +NY    +N+ +++  I   +IP   P P
Sbjct: 93  NYKYNYNNNNYNNNNYNKKLYYNIINIEQIPVPVPVP 129


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +1

Query: 139 NFYKSKIRSNYFRREFNRYVFWFEILKREIPSLAPTP 249
           N+  +   +NY    +N+ +++  I   +IP   P P
Sbjct: 93  NYKYNYNNNNYNNNNYNKKLYYNIINIEQIPVPVPVP 129


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 360 WACNRSTLVTCAFALNFKLYV 298
           W C  S L  CA +L+  L V
Sbjct: 147 WMCTASILNLCAISLDRYLAV 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,935
Number of Sequences: 438
Number of extensions: 2346
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)