Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1839
         (391 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC068515-1|AAH68515.1|  677|Homo sapiens transmembrane and coile...    31   1.8  
BC012564-1|AAH12564.1|  414|Homo sapiens TMCO3 protein protein.        31   1.8  
AY358768-1|AAQ89128.1|  677|Homo sapiens C13orf11 protein.             31   1.8  
AL442125-5|CAI39784.1|  414|Homo sapiens transmembrane and coile...    31   1.8  
AL442125-4|CAI39785.2|  677|Homo sapiens transmembrane and coile...    31   1.8  
AK074415-1|BAB85074.1|  434|Homo sapiens protein ( Homo sapiens ...    31   1.8  
AK000630-1|BAA91295.1|  524|Homo sapiens protein ( Homo sapiens ...    31   1.8  
AF209505-1|AAM92892.1|  255|Homo sapiens putative LAG1-interacti...    31   1.8  

>BC068515-1|AAH68515.1|  677|Homo sapiens transmembrane and
           coiled-coil domains 3 protein.
          Length = 677

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 169 HFLKIITSVGMLGKPVGFQCIVYDILNMF 83
           HF+K I ++GML  P G+ C    +  MF
Sbjct: 269 HFIKDIVTIGMLSLPCGWLCTAIGLPTMF 297


>BC012564-1|AAH12564.1|  414|Homo sapiens TMCO3 protein protein.
          Length = 414

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 169 HFLKIITSVGMLGKPVGFQCIVYDILNMF 83
           HF+K I ++GML  P G+ C    +  MF
Sbjct: 269 HFIKDIVTIGMLSLPCGWLCTAIGLPTMF 297


>AY358768-1|AAQ89128.1|  677|Homo sapiens C13orf11 protein.
          Length = 677

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 169 HFLKIITSVGMLGKPVGFQCIVYDILNMF 83
           HF+K I ++GML  P G+ C    +  MF
Sbjct: 269 HFIKDIVTIGMLSLPCGWLCTAIGLPTMF 297


>AL442125-5|CAI39784.1|  414|Homo sapiens transmembrane and
           coiled-coil domains 3 protein.
          Length = 414

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 169 HFLKIITSVGMLGKPVGFQCIVYDILNMF 83
           HF+K I ++GML  P G+ C    +  MF
Sbjct: 269 HFIKDIVTIGMLSLPCGWLCTAIGLPTMF 297


>AL442125-4|CAI39785.2|  677|Homo sapiens transmembrane and
           coiled-coil domains 3 protein.
          Length = 677

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 169 HFLKIITSVGMLGKPVGFQCIVYDILNMF 83
           HF+K I ++GML  P G+ C    +  MF
Sbjct: 269 HFIKDIVTIGMLSLPCGWLCTAIGLPTMF 297


>AK074415-1|BAB85074.1|  434|Homo sapiens protein ( Homo sapiens
           cDNA FLJ23835 fis, clone KAIA2214. ).
          Length = 434

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 169 HFLKIITSVGMLGKPVGFQCIVYDILNMF 83
           HF+K I ++GML  P G+ C    +  MF
Sbjct: 26  HFIKDIVTIGMLSLPCGWLCTAIGLPTMF 54


>AK000630-1|BAA91295.1|  524|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20623 fis, clone KAT04793. ).
          Length = 524

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 169 HFLKIITSVGMLGKPVGFQCIVYDILNMF 83
           HF+K I ++GML  P G+ C    +  MF
Sbjct: 269 HFIKDIVTIGMLSLPCGWLCTAIGLPTMF 297


>AF209505-1|AAM92892.1|  255|Homo sapiens putative LAG1-interacting
           protein protein.
          Length = 255

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 169 HFLKIITSVGMLGKPVGFQCIVYDILNMF 83
           HF+K I ++GML  P G+ C    +  MF
Sbjct: 127 HFIKDIVTIGMLSLPCGWLCTAIGLPTMF 155


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,814,281
Number of Sequences: 237096
Number of extensions: 997888
Number of successful extensions: 1327
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2698607930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)