Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1839
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023856-7|CAA19563.2|  326|Caenorhabditis elegans Hypothetical ...    32   0.17 
AF039049-6|AAB94249.2|  301|Caenorhabditis elegans Serpentine re...    29   1.5  
AC006673-2|AAF39928.1|  300|Caenorhabditis elegans Serpentine re...    27   4.7  
U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone methyl...    27   6.2  
U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone methyl...    27   6.2  
U46676-1|AAY86202.1|  184|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF039049-7|AAB94243.2|  300|Caenorhabditis elegans Serpentine re...    27   6.2  
AF039049-3|AAB94251.2|  298|Caenorhabditis elegans Serpentine re...    27   6.2  

>AL023856-7|CAA19563.2|  326|Caenorhabditis elegans Hypothetical
           protein Y94A7B.1 protein.
          Length = 326

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -3

Query: 206 VFCAKLIIAIFVTFFKNNYIGWYARETCWISV-HRI*YFKYVQVYIFEINIY 54
           V  A L++   +  FKN Y   ++  TCW  + +      YV   +F I +Y
Sbjct: 99  VLIALLVLVSIIKMFKNRYYILFSMHTCWRYIRYSFLTMNYVLTILFVITVY 150


>AF039049-6|AAB94249.2|  301|Caenorhabditis elegans Serpentine
           receptor, class x protein64 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 206 VFCAKLIIAIFVT-FFKNNYIGWYARETCWISVHRI 102
           VF  +L+   FV  +F N +I ++A    W++VH +
Sbjct: 228 VFMLELLTYFFVPRYFANRWIVFFATSFAWVAVHAV 263


>AC006673-2|AAF39928.1|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein62 protein.
          Length = 300

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 206 VFCAKLIIAIFVT-FFKNNYIGWYARETCWISVHRI 102
           VF  +L+   F+  +F N +I ++     W++VH +
Sbjct: 232 VFLLELLTYFFIPQYFSNKWIVFFGTSFAWVAVHAV 267


>U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone
           methyltransferase-likeprotein 1, isoform b protein.
          Length = 1590

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 280 KTGGNCLRSSCYCYSMKSAYPSSTQ 206
           +TGGNC  ++C   +M +  PSS Q
Sbjct: 631 RTGGNCSDNTCVNRAMLTECPSSCQ 655


>U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone
           methyltransferase-likeprotein 1, isoform a protein.
          Length = 1604

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 280 KTGGNCLRSSCYCYSMKSAYPSSTQ 206
           +TGGNC  ++C   +M +  PSS Q
Sbjct: 645 RTGGNCSDNTCVNRAMLTECPSSCQ 669


>U46676-1|AAY86202.1|  184|Caenorhabditis elegans Hypothetical
           protein F23G4.1 protein.
          Length = 184

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -1

Query: 166 FLKIITSVGMLG---KPVGFQCIVYDILNMF 83
           FL I  ++G+ G   KPV F+  VYD L +F
Sbjct: 126 FLLITVAIGIFGGQAKPVYFETYVYDGLTVF 156


>AF039049-7|AAB94243.2|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein63 protein.
          Length = 300

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 206 VFCAKLIIAIFVT-FFKNNYIGWYARETCWISVH 108
           VF  +L+   F+  +F+N +I ++     W++VH
Sbjct: 228 VFMLELLTYFFIPKYFENRWIVFFGTSFAWVAVH 261


>AF039049-3|AAB94251.2|  298|Caenorhabditis elegans Serpentine
           receptor, class x protein66 protein.
          Length = 298

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 206 VFCAKLIIAIFVT-FFKNNYIGWYARETCWISVH 108
           VF  +L+   F+  +F+N +I ++     W++VH
Sbjct: 228 VFMLELLTYFFIPQYFENRWIVFFGTSFAWVAVH 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,355,586
Number of Sequences: 27780
Number of extensions: 165950
Number of successful extensions: 377
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)