Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1838
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   1.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   3.6  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    25   6.3  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   8.3  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -1

Query: 579 SGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 466
           +G   R G   GRG  +G  G   RGG FG  S  G G
Sbjct: 135 AGRGGRGGFRGGRGGSRGGFGGNSRGG-FGGGSRGGFG 171


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 268 YDAHPQYSFAYDVQDSLTGDSKT--QHETRDGDVVQGSYSVVDPDGTKRTVDYTADPHN 438
           Y  + QY+   D++D  T D  T  +HE  D +V +   S+   +GT  TV+ T++  N
Sbjct: 206 YITNSQYNDTLDMEDQ-TSDLITTFEHENEDHEVHEVP-SIHGMEGTFETVNLTSEAGN 262


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 582 GSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGN 487
           G G ++ S   +G   H G+ G   RGG +GN
Sbjct: 196 GGGAYDYSS--SGSHTHGGSHGTEHRGGSYGN 225


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 265 EYDAHPQYSFAYDVQDSLTG 324
           +Y A+P Y FA  + DSL G
Sbjct: 379 KYRAYPTYDFACPIVDSLEG 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,491,747
Number of Sequences: 5004
Number of extensions: 23231
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)