Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1838
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0178 + 1386981-1387505 30 1.2
10_08_0223 - 15986763-15987575 30 1.6
10_08_0213 - 15912048-15912716 29 3.7
10_08_0239 - 16099673-16100251 28 4.9
12_01_0841 - 7873458-7874225 28 6.5
11_04_0184 - 14645630-14645905,14645997-14646701 28 6.5
07_03_0563 - 19542116-19542217,19542631-19542712,19543823-195445... 28 6.5
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 28 6.5
10_08_0220 - 15977247-15977804 27 8.5
07_03_1610 - 28131623-28131710,28132017-28132321,28132921-281331... 27 8.5
01_06_0719 + 31474028-31474476,31474881-31474939,31479145-31479983 27 8.5
>06_01_0178 + 1386981-1387505
Length = 174
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -1
Query: 582 GSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 466
G G G GRG G+ G G RGGD G+ G G
Sbjct: 94 GGGGGGGKGRKGGRGGDGGSGGAGGRGGDGGSGGQGGRG 132
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -1
Query: 582 GSGMHNRSGVHNGRGVHKGTCGVGQRGGDFG 490
G G SG GRG G+ G G RGGD G
Sbjct: 106 GRGGDGGSGGAGGRGGDGGSGGQGGRGGDGG 136
>10_08_0223 - 15986763-15987575
Length = 270
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -1
Query: 582 GSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 466
G G G +G G G G G+ GGD GN N G G
Sbjct: 44 GGGGGTNGGWGSGSGAGAGA-GYGESGGDSGNTWNYGRG 81
>10_08_0213 - 15912048-15912716
Length = 222
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 582 GSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 466
GSG + +G +G G G G G +GG +G+ S G G
Sbjct: 135 GSGYGSGAGGASGGGGGHGGGGGGGQGGGYGSGSGYGSG 173
>10_08_0239 - 16099673-16100251
Length = 192
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = -1
Query: 582 GSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 466
GSG NR G H G G G Q GG G+ S G G
Sbjct: 57 GSGSSNRYGAHASGGGGGGGGGYSQYGGS-GSGSGYGTG 94
>12_01_0841 - 7873458-7874225
Length = 255
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -1
Query: 582 GSGMHNRSGVH-NGRGVHKGTCGVGQRGGDFGNFSNVGEG 466
GSG GVH G G G G G +GG G+ S G G
Sbjct: 207 GSGYGQGGGVHAGGYGQGGGGGGGGGQGGGSGSGSGYGSG 246
>11_04_0184 - 14645630-14645905,14645997-14646701
Length = 326
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 588 ATGSGMHNRSGVHNGRGVHKGTCGVGQRGG 499
ATG+G+H+ G+ G GT G G G
Sbjct: 91 ATGTGVHDAGGLMPGHTAGHGTTGTGVHHG 120
>07_03_0563 -
19542116-19542217,19542631-19542712,19543823-19544595,
19545207-19545296,19545612-19545689,19546112-19546207,
19546285-19546365,19546587-19546787,19546875-19546967,
19547052-19547116,19547684-19547715,19548844-19548956
Length = 601
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -1
Query: 582 GSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 466
G H G +N R G G G GG G +N G G
Sbjct: 487 GGNKHKNGGRNNNRNSTSGRNGGGGNGGHPGEQNNDGSG 525
>01_06_0430 +
29299970-29300031,29300162-29300294,29301057-29301160,
29302201-29302372,29302488-29302628,29302707-29303055,
29303133-29305477
Length = 1101
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 289 SFAYDVQDSLTG--DSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPHNGFNA 450
S +D Q+ G S + D DV G +++DP +K T + T + H GF++
Sbjct: 558 STIWDSQNDKAGPDSSAVVFDQYDSDV--GEENLLDPFSSKHTEEPTVEDHKGFSS 611
>10_08_0220 - 15977247-15977804
Length = 185
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -1
Query: 582 GSGMHNRSGVHNGRGVHKGT-CGVGQRGGDFGNFSNVGEG 466
GSG G G G G+ G GQ GGD S GEG
Sbjct: 33 GSGEGGGGGSDGGSGWGSGSGSGYGQAGGDGSYASGGGEG 72
>07_03_1610 -
28131623-28131710,28132017-28132321,28132921-28133118,
28134016-28134183
Length = 252
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 150 CICDWSRMCGVCRRNKACSNSRKCADQDSELEGHCYR 40
C D +R+C C R+ +N+ + + + EL+G R
Sbjct: 36 CRADSARLCLPCDRHVHAANTNQSSPDNGELDGEVVR 72
>01_06_0719 + 31474028-31474476,31474881-31474939,31479145-31479983
Length = 448
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 585 TGSGMHNRSGVHNGRGVHKGT-CGVGQRGGDFGNFSNVGEGL 463
TG G +G G GV +GT G G GGD GN + VG G+
Sbjct: 90 TGGGGGEVTG-GGGGGVAEGTGIGGGGGGGDGGNGAGVGCGV 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,789,746
Number of Sequences: 37544
Number of extensions: 191951
Number of successful extensions: 826
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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