Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1838
(594 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr... 30 1.4
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ... 30 1.4
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei... 30 1.4
AF043700-5|AAB97575.2| 573|Caenorhabditis elegans Lipid deplete... 29 1.9
Z81043-8|CAB02804.2| 550|Caenorhabditis elegans Hypothetical pr... 28 4.4
U61237-1|AAB17542.1| 550|Caenorhabditis elegans M89 protein. 28 4.4
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 28 4.4
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 28 4.4
AL023813-2|CAA19424.2| 550|Caenorhabditis elegans Hypothetical ... 28 4.4
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 28 4.4
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 28 4.4
Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z19152-11|CAA79540.2| 1003|Caenorhabditis elegans Hypothetical p... 27 7.6
Z19152-6|CAA79542.2| 774|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z19152-5|CAA79541.1| 698|Caenorhabditis elegans Hypothetical pr... 27 7.6
AF241656-1|AAG36873.1| 698|Caenorhabditis elegans SR protein sp... 27 7.6
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = -1
Query: 546 GRGVHKGTCGVGQRGGDFGNFSNVG 472
GRG G G G RGGDFG N G
Sbjct: 822 GRGRGGGVFGGGGRGGDFGGSGNFG 846
>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 283 QYSFAYDVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDG--TKRTVDYTADPHNGFNAVV 456
QY+ A+ +D+ G Q + RD D + +YS +D +G T++ ++ D H G +
Sbjct: 752 QYT-AFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLR 810
Query: 457 HKEPLAHVAK 486
H A +A+
Sbjct: 811 HGVSAADLAE 820
>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 283 QYSFAYDVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDG--TKRTVDYTADPHNGFNAVV 456
QY+ A+ +D+ G Q + RD D + +YS +D +G T++ ++ D H G +
Sbjct: 752 QYT-AFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLR 810
Query: 457 HKEPLAHVAK 486
H A +A+
Sbjct: 811 HGVSAADLAE 820
>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 283 QYSFAYDVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDG--TKRTVDYTADPHNGFNAVV 456
QY+ A+ +D+ G Q + RD D + +YS +D +G T++ ++ D H G +
Sbjct: 752 QYT-AFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLR 810
Query: 457 HKEPLAHVAK 486
H A +A+
Sbjct: 811 HGVSAADLAE 820
>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
protein.
Length = 2920
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 283 QYSFAYDVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDG--TKRTVDYTADPHNGFNAVV 456
QY+ A+ +D+ G Q + RD D + +YS +D +G T++ ++ D H G +
Sbjct: 752 QYT-AFVAEDAQGGTPVIQIQARDADRDEVTYSFMDKNGRSTQKMNLFSIDEHTGLVKLR 810
Query: 457 HKEPLAHVAK 486
H A +A+
Sbjct: 811 HGVSAADLAE 820
>AF043700-5|AAB97575.2| 573|Caenorhabditis elegans Lipid depleted
protein 6 protein.
Length = 573
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -1
Query: 576 GMHNRSGVHNG--RGVHKGTCGVGQRGGDFGNFSNVGEG 466
G RSG +G RG G G G RGGD G F G G
Sbjct: 515 GFRGRSGDRDGGFRGGFGGRGGGGFRGGDRGGFRGRGGG 553
>Z81043-8|CAB02804.2| 550|Caenorhabditis elegans Hypothetical
protein C29F3.2 protein.
Length = 550
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +1
Query: 262 EEYDAHPQYSFAY--DVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPH 435
E Y QY+F Y +++ S+ + + +E V ++ +DP R +D
Sbjct: 160 EVYQNESQYAFDYISNIEKSMDENGEVYYE-----VNIRRFACLDPHNADRRIDEVWSSE 214
Query: 436 NGFNAVVHKEPLAHVAKVAKIAAPL 510
N V ++P+A A + AP+
Sbjct: 215 NTIRKVNGQKPIAQQAPNVAVNAPI 239
>U61237-1|AAB17542.1| 550|Caenorhabditis elegans M89 protein.
Length = 550
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +1
Query: 262 EEYDAHPQYSFAY--DVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPH 435
E Y QY+F Y +++ S+ + + +E V ++ +DP R +D
Sbjct: 160 EVYQNESQYAFDYISNIEKSMDENGEVYYE-----VNIRRFACLDPHNADRRIDEVWSSE 214
Query: 436 NGFNAVVHKEPLAHVAKVAKIAAPL 510
N V ++P+A A + AP+
Sbjct: 215 NTIRKVNGQKPIAQQAPNVAVNAPI 239
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -1
Query: 585 TGSGMHNRSGVHNGRGVHKGT-CGVGQRGGD-FGNFSNVGEG 466
TG G N G G G GT G G+ GG FG SN G G
Sbjct: 156 TGFGSGNAGGTGFGSGKAGGTGFGSGKAGGTGFGGNSNSGSG 197
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -1
Query: 585 TGSGMHNRSGVHNGRGVHKGT-CGVGQRGGD-FGNFSNVGEG 466
TG G N G G G GT G G+ GG FG SN G G
Sbjct: 156 TGFGSGNAGGTGFGSGKAGGTGFGSGKAGGTGFGGNSNSGSG 197
>AL023813-2|CAA19424.2| 550|Caenorhabditis elegans Hypothetical
protein C29F3.2 protein.
Length = 550
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +1
Query: 262 EEYDAHPQYSFAY--DVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPH 435
E Y QY+F Y +++ S+ + + +E V ++ +DP R +D
Sbjct: 160 EVYQNESQYAFDYISNIEKSMDENGEVYYE-----VNIRRFACLDPHNADRRIDEVWSSE 214
Query: 436 NGFNAVVHKEPLAHVAKVAKIAAPL 510
N V ++P+A A + AP+
Sbjct: 215 NTIRKVNGQKPIAQQAPNVAVNAPI 239
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -1
Query: 582 GSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 466
GSG H+R G H G G H G+C G G G+ + G G
Sbjct: 276 GSG-HHRGGRHGGHGRH-GSCS-GSPRGRHGHGGHGGHG 311
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -1
Query: 585 TGSGMHNRSGVHNGRGVHKGT-CGVGQRGGD-FGNFSNVGEG 466
TG G N G G G GT G G+ GG FG SN G G
Sbjct: 156 TGFGSGNAGGTGFGSGKAGGTGFGSGKAGGTGFGGNSNSGSG 197
>Z30215-9|CAB54247.1| 1037|Caenorhabditis elegans Hypothetical
protein ZK757.3b protein.
Length = 1037
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 558 GVHNGRGVHKGTCGVGQRGGDFGNFSNVG 472
G G G ++G G G RGG +GNF N G
Sbjct: 332 GGPGGPGGYRGGRG-GGRGGSYGNFGNRG 359
>Z30215-8|CAA82941.1| 1040|Caenorhabditis elegans Hypothetical
protein ZK757.3a protein.
Length = 1040
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 558 GVHNGRGVHKGTCGVGQRGGDFGNFSNVG 472
G G G ++G G G RGG +GNF N G
Sbjct: 335 GGPGGPGGYRGGRG-GGRGGSYGNFGNRG 362
>Z29121-4|CAB54514.1| 1037|Caenorhabditis elegans Hypothetical
protein ZK757.3b protein.
Length = 1037
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 558 GVHNGRGVHKGTCGVGQRGGDFGNFSNVG 472
G G G ++G G G RGG +GNF N G
Sbjct: 332 GGPGGPGGYRGGRG-GGRGGSYGNFGNRG 359
>Z29121-3|CAA82389.1| 1040|Caenorhabditis elegans Hypothetical
protein ZK757.3a protein.
Length = 1040
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 558 GVHNGRGVHKGTCGVGQRGGDFGNFSNVG 472
G G G ++G G G RGG +GNF N G
Sbjct: 335 GGPGGPGGYRGGRG-GGRGGSYGNFGNRG 362
>Z19152-11|CAA79540.2| 1003|Caenorhabditis elegans Hypothetical
protein B0464.5a protein.
Length = 1003
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 409 TVDYTADPHNGFNAVVHKEPLAHVAKVAKIAAPLTY 516
T DY +PH G N ++ LAH++++ P Y
Sbjct: 797 TGDYLFEPHQGDNYSRDEDHLAHISELLGAIPPSIY 832
>Z19152-6|CAA79542.2| 774|Caenorhabditis elegans Hypothetical
protein B0464.5c protein.
Length = 774
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 409 TVDYTADPHNGFNAVVHKEPLAHVAKVAKIAAPLTY 516
T DY +PH G N ++ LAH++++ P Y
Sbjct: 568 TGDYLFEPHQGDNYSRDEDHLAHISELLGAIPPSIY 603
>Z19152-5|CAA79541.1| 698|Caenorhabditis elegans Hypothetical
protein B0464.5b protein.
Length = 698
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 409 TVDYTADPHNGFNAVVHKEPLAHVAKVAKIAAPLTY 516
T DY +PH G N ++ LAH++++ P Y
Sbjct: 509 TGDYLFEPHQGDNYSRDEDHLAHISELLGAIPPSIY 544
>AF241656-1|AAG36873.1| 698|Caenorhabditis elegans SR protein
specfic kinase SPK-1 protein.
Length = 698
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 409 TVDYTADPHNGFNAVVHKEPLAHVAKVAKIAAPLTY 516
T DY +PH G N ++ LAH++++ P Y
Sbjct: 509 TGDYLFEPHQGDNYSRDEDHLAHISELLGAIPPSIY 544
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,655,203
Number of Sequences: 27780
Number of extensions: 147186
Number of successful extensions: 631
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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