Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1836
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    28   0.87 
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    27   2.0  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.6  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    26   3.5  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    26   4.6  
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    26   4.6  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    25   8.1  
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         25   8.1  

>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 14/62 (22%), Positives = 30/62 (48%)
 Frame = -3

Query: 290 VHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPIPKKGDRSDP 111
           V  ++G   +  +      PE+  ++ R+++ +    +VP  W+   V+PI K G  + P
Sbjct: 39  VKNANGNYTVTMIAGDGIGPEIAQSVERIFKAA----KVPIEWERVKVYPILKNGTTTIP 94

Query: 110 SN 105
            +
Sbjct: 95  DD 96


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
 Frame = -3

Query: 500 RSSLPPVGKSNDSLAHSAKEK-ADLLVKLFASYSTLDDGGATPPNISRCDSS----MPEI 336
           + S  P  KS+ +L  ++K +  DL     A +S    GG T  N+S  + S    +P+ 
Sbjct: 519 QKSHSPAIKSSSTLRKASKTRIVDLSAPNSAVFSKNASGGDTSSNVSLLNGSASEEIPQN 578

Query: 335 RITQRAVRQELRLLDVHKSSGPDCIPAVV 249
             + +  R+++ +L   + +GP+ + A++
Sbjct: 579 TESGQVFRKKIEML--RQEAGPEWVDALM 605


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
 Frame = -3

Query: 413 ASYSTLDDGGATPPNISRCDSSMPEIRITQRAVRQELRLLDVHKSSGP--DCIPAVVLKT 240
           A+Y+T     A PP I   +   P + +    V +E    +V +SS    +     VLK 
Sbjct: 204 ANYNTPYYPTAIPPPI---EEYSPSVSLPTSPVAEE-SYNNVQRSSTVRNNTTQKSVLKK 259

Query: 239 CAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPIPKKGDRSDPSNYRPI 93
            + +++PA T  YR +  +++VP   K   +    K+G  S  S Y  +
Sbjct: 260 PSRKMSPAYTSSYRQNSPSSQVPPVSKKHVIIYENKEGSSSSESVYEDV 308


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 227 LTPALTRLYRLSYNTNRVPSSWKTA-HVHPIPKKGDRSDPSNYRPIAIT 84
           L  +LTR+  L +  +   +  K   +V   PKKG   DPS   P  +T
Sbjct: 14  LRVSLTRVAHLVFANSHESNDLKMVENVSSTPKKGVLEDPSTLTPEVVT 62


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -1

Query: 478 VSPMTVWLIV--RRRRLTFWSSSLPHTRL 398
           VSP   W+I   + R + FWS   PH++L
Sbjct: 520 VSPDGKWIISGSKDRTIQFWSPDSPHSQL 548


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 472 DLPTGGRLDLQKLPSAALSSDQKARLPEG*AIQSLAN 582
           +L TG  +DL+K P    +S+ ++ LP    I  LAN
Sbjct: 17  ELKTGHEIDLEKGPLPEHNSEGESTLPPYSDISKLAN 53


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 431 LLVKLFASYSTLDDGGATPPN 369
           LL ++F+ Y+TL DG + P N
Sbjct: 160 LLAEIFSLYNTLRDGLSAPSN 180


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 267 IWPTRLMDIKKPKLLPDRTLCDANLRHGAVTPGDV 371
           I PTR   + KP LLP+++  D     G  T G V
Sbjct: 20  ILPTRTKPVVKPYLLPEKSTSDYE-NSGKGTVGQV 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,829
Number of Sequences: 5004
Number of extensions: 52119
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)