Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1836
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 38 0.004
07_03_1769 + 29377784-29377878,29377993-29378180,29378340-293784... 31 0.67
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 31 0.67
12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693 30 1.2
03_02_0971 - 12807981-12808094,12808949-12809053,12809236-128092... 30 1.5
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135 29 2.0
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 29 2.0
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 29 3.6
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 29 3.6
01_05_0645 - 23899579-23904483 29 3.6
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 28 4.7
11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458... 28 6.2
03_05_0519 - 25131614-25134778 28 6.2
11_03_0188 - 11338013-11338976,11339843-11340183 27 8.2
09_02_0615 - 11251869-11252832,11253699-11254039 27 8.2
06_03_0490 - 21375400-21376363,21377230-21377570 27 8.2
06_02_0143 - 12266120-12267083,12267950-12268290 27 8.2
06_02_0141 + 12259098-12259438,12260305-12261268 27 8.2
05_01_0573 - 5083030-5083151,5084639-5084738,5084790-5084829,508... 27 8.2
02_04_0187 - 20757713-20758632,20759056-20759812 27 8.2
02_04_0118 + 19924184-19924524,19925391-19926354 27 8.2
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 38.3 bits (85), Expect = 0.004
Identities = 24/88 (27%), Positives = 41/88 (46%)
Frame = -3
Query: 284 KSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPIPKKGDRSDPSN 105
KS GPD PA + L + R + + +P + IPKK D +
Sbjct: 907 KSPGPDGFPARFYQRNWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPIDLKD 966
Query: 104 YRPIAITSLLSKVMERIINIQLLKYLED 21
YRPI++ +++ KV+ + + +L L+D
Sbjct: 967 YRPISLCNVVYKVVSKCLVNRLRPILDD 994
>07_03_1769 +
29377784-29377878,29377993-29378180,29378340-29378472,
29378580-29378715,29378996-29379072,29379162-29380830,
29380935-29381018,29381120-29381224,29381302-29381358
Length = 847
Score = 31.1 bits (67), Expect = 0.67
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 455 HSAKEKADLLVKLFASYSTLDDGGATPPNISRCDSSMPEI 336
H AK+ LL++ ++ D + P S+C SMPE+
Sbjct: 174 HMAKQPPKLLLETKPTFQCSDSDNSRPQKASQCSDSMPEM 213
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 31.1 bits (67), Expect = 0.67
Identities = 18/95 (18%), Positives = 42/95 (44%)
Frame = -3
Query: 335 RITQRAVRQELRLLDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKT 156
R T + + + ++ K+ GPD +K C + RL + N +
Sbjct: 311 RETVKEIDSLMSIIPADKAPGPDGFNGFFMKKCWHIIAQDYYRLVAHFHAGNVDLEILNS 370
Query: 155 AHVHPIPKKGDRSDPSNYRPIAITSLLSKVMERII 51
+ + +PKK +++RPI++ + K++ +++
Sbjct: 371 SFITLVPKKTSLETVNDFRPISLMGISLKIVTKLL 405
>12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693
Length = 407
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 367 MLGGVAPPSSKVEYEAKSLTRRSAFSFAL*ARLSLDLPT 483
+L +AP +S+V S TRRS FS+ L +S+ +PT
Sbjct: 127 LLSRLAPATSRVVAAVSSPTRRSPFSYRLQLVISVLIPT 165
>03_02_0971 -
12807981-12808094,12808949-12809053,12809236-12809295,
12809399-12809537,12809648-12809832,12809926-12810009,
12810093-12810215,12810617-12810796,12811017-12811092,
12811178-12811277,12811355-12811430,12812155-12812244,
12812342-12812449,12813583-12813651,12813751-12813921,
12814002-12814072,12814263-12814360,12814659-12814719,
12814935-12814971,12815217-12815308,12815428-12815549,
12816281-12816414
Length = 764
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +1
Query: 244 FRTTAGMQSGPLDLWTSRSRSSCLTARCVMRISGMELSHREMLGGVAPPSSKVEYEAKS 420
F G++S DL T + LT C+ +I G LSH+ + PSS V + S
Sbjct: 352 FLLKMGLESS--DLETVCVKDRLLTNECIDKIVGFALSHQLKHSTIPDPSSDVRFTLSS 408
>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
Length = 1275
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +3
Query: 3 VTDQLAILKILKKLDVYDSLHHLGKQGSYRDRSVIRGVRPVTLLGDRVDMSSLP*RRNPV 182
+ DQL +IL K ++ D + G Q Y R +P+T D+ MS +R P
Sbjct: 727 IKDQLKKQRILGKREMGDFCYQFGFQDPYVHRKRKTHSKPMTKPNDKSKMSFQATKRKPK 786
Query: 183 GIVREAI*TR 212
I + I T+
Sbjct: 787 RIYNKNIRTQ 796
>02_02_0704 +
13095449-13095584,13095671-13095990,13096102-13096423,
13096556-13096632,13096744-13097127
Length = 412
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = -1
Query: 415 LPHTRLWMTEEPPRPTSPGVT----APCLRFASHSVRSGRSF 302
L +LW EEP +P+SP T PC A ++ ++G +F
Sbjct: 129 LQSVQLWSQEEPQQPSSPSPTPTKDLPCKPVALNARKAGGAF 170
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 28.7 bits (61), Expect = 3.6
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +3
Query: 3 VTDQLAILKILKKLDVYDSLHHLGKQGSYRDRSVIRGVRPVTLLGDRVDMSSLP*RRNPV 182
+ DQL +IL K ++ D + G Q Y R +P+T D+ MS +R P
Sbjct: 408 IKDQLKKQRILGKREMGDFCYQFGFQDPYVYRKRKTHSKPMTKPNDKSKMSFQATKRKPK 467
Query: 183 GIVREAI*TR 212
I + I T+
Sbjct: 468 RIYNKNIRTQ 477
>09_04_0042 -
14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -3
Query: 167 SWKTAH-VHPIPKKGDRSDPSNYRPIAITSLLSKVMERIINIQLLKYL 27
+W+ A+ V P KKG DPS+Y I + K ER + + ++ YL
Sbjct: 281 AWQAANFVKPDTKKGGSMDPSDYVKIKCIA-SGKPSERFVLVCIVAYL 327
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 28.7 bits (61), Expect = 3.6
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +3
Query: 3 VTDQLAILKILKKLDVYDSLHHLGKQGSYRDRSVIRGVRPVTLLGDRVDMSSLP*RRNPV 182
+ DQL +IL K ++ D + G Q Y R +P+T D+ MS +R P
Sbjct: 647 IKDQLKKQRILGKREMGDFCYQFGFQDPYVYRKRKTHSKPMTKPNDKSKMSFQATKRKPK 706
Query: 183 GIVREAI*TR 212
I + I T+
Sbjct: 707 RIYNKNIRTQ 716
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -1
Query: 448 RRRRLTFWSSSLPHTRLWMTEEPPRPTSPGVTAPC 344
RR + WS S TR WM P TS +T PC
Sbjct: 198 RRASKSAWSQSSTGTRKWMQYRPAGETS--LTLPC 230
>11_04_0144 +
14044973-14044984,14045050-14045183,14045329-14045824,
14046097-14046117,14047504-14047767,14048635-14048715
Length = 335
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/85 (20%), Positives = 36/85 (42%)
Frame = -3
Query: 305 LRLLDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPIPKKG 126
++++ K+ PD I LK C P ++ L + + + +PKK
Sbjct: 231 IKVIQPDKAPSPDGINGYFLKKCWPIISQEFYWLAAHFHACYTDLQPINKSFITLVPKKS 290
Query: 125 DRSDPSNYRPIAITSLLSKVMERII 51
++YRPI++ + K+ ++
Sbjct: 291 SPETVNDYRPISLMGISLKLPVSVV 315
>03_05_0519 - 25131614-25134778
Length = 1054
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = -1
Query: 520 LQKVTSAGLAFHQWVSPMTVWLIVRRRRLTFWSSSLPHTRLWMTEEPPRPTSPGVTA 350
L KV AG +F + + V+ + +R + ++W +EPP P P A
Sbjct: 99 LGKVKVAGASFSKAGDEVLVYYPLEKRSVFSQIKGEIGLKIWFVDEPPPPPPPAAPA 155
>11_03_0188 - 11338013-11338976,11339843-11340183
Length = 434
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 474 LTHWWKARPAEVTFCSLI*RPKSTA 548
L HWWK E +C++I + K+ A
Sbjct: 291 LVHWWKILRKEPKWCAMIEKDKNKA 315
>09_02_0615 - 11251869-11252832,11253699-11254039
Length = 434
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 474 LTHWWKARPAEVTFCSLI*RPKSTA 548
L HWWK E +C++I + K+ A
Sbjct: 291 LVHWWKILRKEPKWCAMIEKDKNKA 315
>06_03_0490 - 21375400-21376363,21377230-21377570
Length = 434
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 474 LTHWWKARPAEVTFCSLI*RPKSTA 548
L HWWK E +C++I + K+ A
Sbjct: 291 LVHWWKILRKEPKWCAMIEKDKNKA 315
>06_02_0143 - 12266120-12267083,12267950-12268290
Length = 434
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 474 LTHWWKARPAEVTFCSLI*RPKSTA 548
L HWWK E +C++I + K+ A
Sbjct: 291 LVHWWKILRKEPKWCAMIEKDKNKA 315
>06_02_0141 + 12259098-12259438,12260305-12261268
Length = 434
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 474 LTHWWKARPAEVTFCSLI*RPKSTA 548
L HWWK E +C++I + K+ A
Sbjct: 291 LVHWWKILRKEPKWCAMIEKDKNKA 315
>05_01_0573 -
5083030-5083151,5084639-5084738,5084790-5084829,
5085122-5085567
Length = 235
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 235 AHVFRTTAGMQSGPLDLWTSRSRSSCLTARC 327
A ++ G Q G D W+S SRS C C
Sbjct: 59 ARIYPMGNGWQGGSTDHWSSVSRSHCSNGCC 89
>02_04_0187 - 20757713-20758632,20759056-20759812
Length = 558
Score = 27.5 bits (58), Expect = 8.2
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -3
Query: 536 WSLDKAAEGNFCRSSLPP--VGKSNDSLAHSAKEKADLLVKLFASYSTLDDGGATPPNIS 363
W + E C S PP + K +D L H+AK + KLF +Y LD GAT
Sbjct: 350 WREKEIDEDTRC-SQKPPACIIKHSDILNHAAKVYTYRIYKLFETY-FLDGCGATKFKEL 407
Query: 362 RCDSS 348
C+ +
Sbjct: 408 HCEDN 412
>02_04_0118 + 19924184-19924524,19925391-19926354
Length = 434
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 474 LTHWWKARPAEVTFCSLI*RPKSTA 548
L HWWK E +C++I + K+ A
Sbjct: 291 LVHWWKILRKEPKWCAMIEKDKNKA 315
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,968,580
Number of Sequences: 37544
Number of extensions: 410928
Number of successful extensions: 1255
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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