Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1836
(583 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 82 5e-16
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 82 5e-16
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 59 5e-09
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 58 9e-09
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 58 1e-08
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 58 1e-08
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 58 1e-08
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 58 1e-08
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 57 2e-08
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 56 5e-08
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 54 2e-07
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 51 1e-06
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 48 9e-06
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 47 2e-05
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 47 2e-05
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 47 2e-05
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 45 7e-05
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 45 7e-05
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 45 7e-05
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 45 7e-05
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 45 7e-05
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 44 1e-04
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 44 2e-04
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 37 0.023
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 36 0.040
X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros... 36 0.040
BT024352-1|ABC86414.1| 298|Drosophila melanogaster IP09275p pro... 33 0.37
AE014297-2613|AAF55623.1| 297|Drosophila melanogaster CG14285-P... 33 0.37
AJ250870-4|CAC17711.1| 409|Drosophila melanogaster chromatin co... 29 4.6
AJ250870-1|CAC17708.1| 410|Drosophila melanogaster chromatin co... 29 4.6
AJ250868-1|CAC17706.1| 410|Drosophila melanogaster chromatin co... 29 4.6
AJ250866-1|CAC17704.1| 409|Drosophila melanogaster chromatin co... 29 4.6
AF182444-1|AAF03833.1| 410|Drosophila melanogaster disco-intera... 29 4.6
AF175712-1|AAD50505.1| 410|Drosophila melanogaster dsRBD-contai... 29 4.6
AF175711-1|AAD50502.1| 410|Drosophila melanogaster dsRBD-contai... 29 4.6
AE014298-3169|AAN09008.1| 409|Drosophila melanogaster CG17686-P... 29 4.6
AE014298-3168|AAF45390.2| 409|Drosophila melanogaster CG17686-P... 29 4.6
AE014298-3167|AAN09007.1| 410|Drosophila melanogaster CG17686-P... 29 4.6
AY089345-1|AAL90083.1| 335|Drosophila melanogaster AT16588p pro... 29 6.1
AF218310-1|AAF67101.1| 410|Drosophila melanogaster Ultrabithora... 29 6.1
AE014134-1001|AAF52313.1| 335|Drosophila melanogaster CG9064-PA... 29 6.1
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 82.2 bits (194), Expect = 5e-16
Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 12/187 (6%)
Frame = -3
Query: 548 SRAFWSLDKAAEGNFCRSSLPPVGKSNDSLAHSAKEKADLLVKLFA-------SYS---T 399
S+ FW++ KA + R + P D + S KEKA++L +F SYS T
Sbjct: 381 SKPFWNITKAIKK---RKQIVPCLSKADEIYASGKEKANILADVFQLKHNLTHSYSNQNT 437
Query: 398 LDDGGATPPNISRCDSSMPEI-RITQRAVRQELRLLDVHKSSGPDCIPAVVLKTCAPELT 222
+D + +I+ +++ EI R+T V ++ L KS G D IP + LK
Sbjct: 438 IDQVKISLQSIAETPNNIAEICRVTYPEVFSIVKALHTRKSPGIDGIPNISLKNLPTSAI 497
Query: 221 PALTRLYRLSYNTNRVPSSWKTAHVHPIPKKGDRSD-PSNYRPIAITSLLSKVMERIINI 45
+ + P WK A + PI K G D P +YRPI++ S LSK++E++I +
Sbjct: 498 NHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPESYRPISLLSGLSKILEKLIKL 557
Query: 44 QLLKYLE 24
+L+K+L+
Sbjct: 558 RLVKFLD 564
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 82.2 bits (194), Expect = 5e-16
Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 12/187 (6%)
Frame = -3
Query: 548 SRAFWSLDKAAEGNFCRSSLPPVGKSNDSLAHSAKEKADLLVKLFA-------SYS---T 399
S+ FW++ KA + R + P D + S KEKA++L +F SYS T
Sbjct: 329 SKPFWNITKAIKK---RKQIVPCLSKADEIYASGKEKANILADVFQLKHNLTHSYSNQNT 385
Query: 398 LDDGGATPPNISRCDSSMPEI-RITQRAVRQELRLLDVHKSSGPDCIPAVVLKTCAPELT 222
+D + +I+ +++ EI R+T V ++ L KS G D IP + LK
Sbjct: 386 IDQVKISLQSIAETPNNIAEICRVTYPEVFSIVKALHTRKSPGIDGIPNISLKNLPTSAI 445
Query: 221 PALTRLYRLSYNTNRVPSSWKTAHVHPIPKKGDRSD-PSNYRPIAITSLLSKVMERIINI 45
+ + P WK A + PI K G D P +YRPI++ S LSK++E++I +
Sbjct: 446 NHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPESYRPISLLSGLSKILEKLIKL 505
Query: 44 QLLKYLE 24
+L+K+L+
Sbjct: 506 RLVKFLD 512
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 58.8 bits (136), Expect = 5e-09
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = -3
Query: 284 KSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPIPKKGDR-SDPS 108
KS G D + +LK +P L L ++ T + P +W++A + PI K SD +
Sbjct: 452 KSPGADRVSYPMLKNLSPHLKTKLLDIFNQILTTGKYPHTWRSAIIIPISKPNKPPSDIN 511
Query: 107 NYRPIAITSLLSKVMERIINIQLLKYLEDRQLIS 6
+YRPI++ S L K +E+II +L +++ LIS
Sbjct: 512 SYRPISLLSCLGKTLEKIIAQRLTWFIKRHNLIS 545
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 58.0 bits (134), Expect = 9e-09
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Frame = -3
Query: 332 ITQRAVRQELRLLDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTA 153
IT + + E++ L K+ G D I ++KT + T L +Y P +WK A
Sbjct: 481 ITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKHA 540
Query: 152 HVHPIPKKG-DRSDPSNYRPIAITSLLSKVMERIINIQLLK 33
V I K G ++P +YRPI++ S LSK+ ER++ +L K
Sbjct: 541 QVKMILKPGKSANEPRSYRPISLLSGLSKIFERLLLKRLFK 581
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 57.6 bits (133), Expect = 1e-08
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Frame = -3
Query: 332 ITQRAVRQELRLLDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTA 153
IT + + E++ L K+ G D I ++KT + T L +Y P +WK A
Sbjct: 365 ITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHA 424
Query: 152 HVHPIPKKGDR-SDPSNYRPIAITSLLSKVMERIINIQLLK 33
V I K G +DP +YRPI++ S LSK+ ER++ +L +
Sbjct: 425 QVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFR 465
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 57.6 bits (133), Expect = 1e-08
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Frame = -3
Query: 332 ITQRAVRQELRLLDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTA 153
IT + + E++ L K+ G D I ++KT + T L +Y P +WK A
Sbjct: 481 ITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHA 540
Query: 152 HVHPIPKKGDR-SDPSNYRPIAITSLLSKVMERIINIQLLK 33
V I K G +DP +YRPI++ S LSK+ ER++ +L +
Sbjct: 541 QVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFR 581
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 57.6 bits (133), Expect = 1e-08
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Frame = -3
Query: 332 ITQRAVRQELRLLDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTA 153
IT + + E++ L K+ G D I ++KT + T L +Y P +WK A
Sbjct: 443 ITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHA 502
Query: 152 HVHPIPKKGDR-SDPSNYRPIAITSLLSKVMERIINIQLLK 33
V I K G +DP +YRPI++ S LSK+ ER++ +L +
Sbjct: 503 QVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFR 543
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 57.6 bits (133), Expect = 1e-08
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Frame = -3
Query: 332 ITQRAVRQELRLLDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTA 153
IT + + E++ L K+ G D I ++KT + T L +Y P +WK A
Sbjct: 481 ITLKELNDEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRIGYYPDAWKHA 540
Query: 152 HVHPIPKKGDR-SDPSNYRPIAITSLLSKVMERIINIQLLK 33
V I K G +DP +YRPI++ S LSK+ ER++ +L +
Sbjct: 541 QVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFR 581
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 57.2 bits (132), Expect = 2e-08
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Frame = -3
Query: 332 ITQRAVRQELRLLDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTA 153
IT + +E++ L K+ G D I ++KT + T L +Y P +WK A
Sbjct: 493 ITLNELNEEIKNLKNSKAPGKDLITNQLIKTLPTKATLYLILIYNSILRLGYYPEAWKHA 552
Query: 152 HVHPIPKKGDRS-DPSNYRPIAITSLLSKVMERIINIQLLK 33
V I K G S +P +YRPI++ S LSK+ ER++ +L +
Sbjct: 553 QVKMILKPGKSSNEPKSYRPISLLSGLSKMFERLLLKRLFR 593
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 55.6 bits (128), Expect = 5e-08
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Frame = -3
Query: 332 ITQRAVRQELRLLDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTA 153
IT + + E++ L K+ G D I ++K + T L +Y P +WK A
Sbjct: 481 ITLKELNDEIKNLKNSKAPGKDLITNQLIKALPTKATLYLILIYNSILRIGYYPDAWKHA 540
Query: 152 HVHPIPKKGDR-SDPSNYRPIAITSLLSKVMERIINIQLLK 33
V I K G +DP +YRPI++ S LSK+ ER++ +L +
Sbjct: 541 QVKMILKPGKSVNDPKSYRPISLLSGLSKMFERLLLKRLFR 581
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 53.6 bits (123), Expect = 2e-07
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Frame = -3
Query: 350 SMPEIRITQRAVRQELRLLDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVP 171
S+P I + + ++ L + KS G D + LK L +Y P
Sbjct: 431 SLPIKPIRVEEIVEAIKSLPLKKSPGIDNVCNATLKALPVRAILYLALIYNAILRVQFFP 490
Query: 170 SSWKTAHVHPIPKKGDRSD-PSNYRPIAITSLLSKVMERIINIQLLKYLEDRQLISD 3
WK A + I K G + P +YRPI++ S LSK+ ER+I +L + +R+++ D
Sbjct: 491 KQWKMAAILMIHKPGKPEESPESYRPISLLSSLSKLWERLIANRLNDIMTERRILPD 547
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 50.8 bits (116), Expect = 1e-06
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Frame = -3
Query: 350 SMPEIRITQRAVRQELRLLDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVP 171
S+P +T V+ + L + K+ G D + ++ + L ++ + P
Sbjct: 234 SLPPSAVTLEEVKNLIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLVLIFNSVLDVGYFP 293
Query: 170 SSWKTAHVHPIPKKGDR-SDPSNYRPIAITSLLSKVMERIINIQLL 36
+WK+A + I K G +D +YRPI++ L K+MER+I +LL
Sbjct: 294 KAWKSASIIMIHKTGKTPTDVDSYRPISLLPSLGKIMERLILNRLL 339
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 48.0 bits (109), Expect = 9e-06
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Frame = -3
Query: 350 SMPEIRITQRAVRQELRLLDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVP 171
S+P +T V+ + L + K+ G D + ++ + L ++ + P
Sbjct: 432 SLPLSAVTLEEVKNLIAKLPLKKAPGEDLLDNRTIRLLPDQALQFLALIFNSVLDVGYFP 491
Query: 170 SSWKTAHVHPIPKKGDR-SDPSNYRPIAITSLLSKVMERIINIQLL 36
+WK+A + I K G +D +YRP ++ L K+MER+I +LL
Sbjct: 492 KAWKSASIIMIHKTGKTPTDVDSYRPTSLLPSLGKIMERLILNRLL 537
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = -3
Query: 296 LDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPIPKKG-DR 120
L+ KS G D I +L + L+ P WK + + IPK G D+
Sbjct: 444 LNPRKSPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYFPQKWKKSTIVMIPKPGKDK 503
Query: 119 SDPSNYRPIAITSLLSKVMERIINIQLLKYL 27
+ PS+YRPI++ + LSK+ E+++ +++ +L
Sbjct: 504 TQPSSYRPISLLTCLSKLFEKMLLLRISPHL 534
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = -3
Query: 296 LDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPIPKKG-DR 120
L+ KS G D I +L + L+ P WK + + IPK G D+
Sbjct: 444 LNPRKSPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYFPQKWKKSTIVMIPKPGKDK 503
Query: 119 SDPSNYRPIAITSLLSKVMERIINIQLLKYL 27
+ PS+YRPI++ + LSK+ E+++ +++ +L
Sbjct: 504 TQPSSYRPISLLTCLSKLFEKMLLLRISPHL 534
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = -3
Query: 287 HKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPIPKKGD-RSDP 111
+K+ G D I LK + +T ++ P WK + I K G +P
Sbjct: 451 NKAPGHDVICNATLKALPRQAILYITLVFNAIVRLQYFPYQWKLGIISMIHKPGKPEREP 510
Query: 110 SNYRPIAITSLLSKVMERIINIQLLKYLE 24
++YRPI++ +SKV ER+I ++++ +E
Sbjct: 511 ASYRPISLLPSISKVFERLIAVRIVSIME 539
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 45.2 bits (102), Expect = 7e-05
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = -3
Query: 296 LDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPIPKKGDRS 117
L++ K+ G D + + + L +Y T P+ WK A + IPK G
Sbjct: 49 LELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISMIPKPGKSP 108
Query: 116 DPSN-YRPIAITSLLSKVMERII 51
N YRPI++ S LSK++ERI+
Sbjct: 109 FALNSYRPISLLSGLSKLLERIL 131
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 45.2 bits (102), Expect = 7e-05
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = -3
Query: 296 LDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPIPKKGDRS 117
L++ K+ G D + + + L +Y T P+ WK A + IPK G
Sbjct: 496 LELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISMIPKPGKSP 555
Query: 116 DPSN-YRPIAITSLLSKVMERII 51
N YRPI++ S LSK++ERI+
Sbjct: 556 FALNSYRPISLLSGLSKLLERIL 578
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 45.2 bits (102), Expect = 7e-05
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = -3
Query: 296 LDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPIPKKGDRS 117
L++ K+ G D + + + L +Y T P+ WK A + IPK G
Sbjct: 496 LELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISMIPKPGKSP 555
Query: 116 DPSN-YRPIAITSLLSKVMERII 51
N YRPI++ S LSK++ERI+
Sbjct: 556 FALNSYRPISLLSGLSKLLERIL 578
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 45.2 bits (102), Expect = 7e-05
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = -3
Query: 296 LDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPIPKKGDRS 117
L++ K+ G D + + + L +Y T P+ WK A + IPK G
Sbjct: 496 LELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFPNKWKHASISMIPKPGKSP 555
Query: 116 DPSN-YRPIAITSLLSKVMERII 51
N YRPI++ S LSK++ERI+
Sbjct: 556 FALNSYRPISLLSGLSKLLERIL 578
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 45.2 bits (102), Expect = 7e-05
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Frame = -3
Query: 437 ADLLVKLFASYSTLDDGGATPPNISRCDSSMPEIRITQRAVRQELRLLDVHKSSGPDCIP 258
A+++ +LF S TL PP S P IT V + + + +K+ G D IP
Sbjct: 374 ANIVSELFPSQHTLWQPAVDPPA-----SDFP--CITSCEVVEAAKRIRPNKAPGIDGIP 426
Query: 257 AVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPIPK-KGDRSDPSNYRPIAITS 81
V++K A ++ P WK + + K KG + P +YRP+ +
Sbjct: 427 GVIVKAAATARPEVFRDTFQQCLLDGVFPKRWKKMKLVLLLKGKGPANVPRSYRPLCLLD 486
Query: 80 LLSKVMERII 51
++ K+ ERI+
Sbjct: 487 IVGKLFERIL 496
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/72 (30%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Frame = -3
Query: 215 LTRLYRLSYNTNRVPSSWKTAHVHPIPKKG-DRSDPSNYRPIAITSLLSKVMERIINIQL 39
+T+L+ +N++ +P ++KT+ + PI K D++ S+YRPI++ ++K++++II +L
Sbjct: 471 ITKLFNEIFNSH-IPQAYKTSLIIPILKPNTDKTKTSSYRPISLNCCIAKILDKIIAKRL 529
Query: 38 LKYLEDRQLISD 3
+ LI+D
Sbjct: 530 WWLVTYNNLIND 541
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 43.6 bits (98), Expect = 2e-04
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = -3
Query: 296 LDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPIPKKG-DR 120
L KS G D I ++ +T+L+ P WK + IPK G +
Sbjct: 446 LSPKKSPGYDLITPEMIIQLPHSAVRYITKLFNAITKLGYFPQRWKMMKIIMIPKPGKNH 505
Query: 119 SDPSNYRPIAITSLLSKVMERIINIQL 39
+ S+YRPI++ S +SK+ E+ + I+L
Sbjct: 506 TVASSYRPISLLSCISKLFEKCLLIRL 532
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 36.7 bits (81), Expect = 0.023
Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Frame = -3
Query: 173 PSSWKTAHVHPIPK-KGDRSDPSNYRPIAITSLLSKVMERIINIQLLKYLE 24
P WK + + IPK + D++ PS YRPI++ + LSK+ E+ + +++ +L+
Sbjct: 27 PQKWKKSIIIMIPKPEKDKTQPS-YRPISLLTCLSKLFEKGLLLRISPHLK 76
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 35.9 bits (79), Expect = 0.040
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Frame = -3
Query: 296 LDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPIPKKGDRS 117
L +S G D I + K + L L+ P+ WK V + K D+
Sbjct: 446 LKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRVVSLLKGPDKD 505
Query: 116 --DPSNYRPIAITSLLSKVMERII 51
+PS+YR I + + KV+E I+
Sbjct: 506 KCEPSSYRGICLLPVFGKVLEAIM 529
>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type II retrotransposable
element R2Dm. ).
Length = 1057
Score = 35.9 bits (79), Expect = 0.040
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Frame = -3
Query: 380 TPPNISRCDSSMPEI-----RITQRAVRQELRLLDVHKSSGPDCIPAVVLKTCAPELTPA 216
T P+ S C + ++ R+ Q+LR V SS P P + A E+
Sbjct: 319 TQPSPSSCSGEVIQMDHSLERVWSAITEQDLRASRVSLSSSPG--PDGITPKSAREVPSG 376
Query: 215 LT-RLYRLSYNTNRVPSSWKTAHVHPIPKKGDRSDPSNYRPIAITSLLSKVMERIINIQL 39
+ R+ L +P S + A IPK P ++RPI++ S+L + + I+ +L
Sbjct: 377 IMLRIMNLILWCGNLPHSIRLARTVFIPKTVTAKRPQDFRPISVPSVLVRQLNAILATRL 436
>BT024352-1|ABC86414.1| 298|Drosophila melanogaster IP09275p
protein.
Length = 298
Score = 32.7 bits (71), Expect = 0.37
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 21 ILKILKKLDVYDSLHHLGKQGSYRDRSVIRGVRPVTLLGDRVD 149
++ ++ LDV S GK G Y +++VI G P+ LLG VD
Sbjct: 147 LIYTVRDLDVVVSQVAEGKSGKYSNKAVIPGKSPLHLLGPMVD 189
>AE014297-2613|AAF55623.1| 297|Drosophila melanogaster CG14285-PA
protein.
Length = 297
Score = 32.7 bits (71), Expect = 0.37
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 21 ILKILKKLDVYDSLHHLGKQGSYRDRSVIRGVRPVTLLGDRVD 149
++ ++ LDV S GK G Y +++VI G P+ LLG VD
Sbjct: 146 LIYTVRDLDVVVSQVAEGKSGKYSNKAVIPGKSPLHLLGPMVD 188
>AJ250870-4|CAC17711.1| 409|Drosophila melanogaster chromatin
component KLETT protein.
Length = 409
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 213 NASISPLVQYQQGSVFMEDCSCPPYPQEG*PVGPLELQTYRDNFLAFQGDGA 58
NA++ PL+Q + +++ P P+ +Q+ +D FLA Q GA
Sbjct: 23 NATVKPLIQMPLQAANVQEQQSSPVALYPTSASPVAVQSPQDAFLAVQSPGA 74
>AJ250870-1|CAC17708.1| 410|Drosophila melanogaster chromatin
component KLETT protein.
Length = 410
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 213 NASISPLVQYQQGSVFMEDCSCPPYPQEG*PVGPLELQTYRDNFLAFQGDGA 58
NA++ PL+Q + +++ P P+ +Q+ +D FLA Q GA
Sbjct: 24 NATVKPLIQMPLQAANVQEQQSSPVALYPTSASPVAVQSPQDAFLAVQSPGA 75
>AJ250868-1|CAC17706.1| 410|Drosophila melanogaster chromatin
component KLETT protein.
Length = 410
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 213 NASISPLVQYQQGSVFMEDCSCPPYPQEG*PVGPLELQTYRDNFLAFQGDGA 58
NA++ PL+Q + +++ P P+ +Q+ +D FLA Q GA
Sbjct: 24 NATVKPLIQMPLQAANVQEQQSSPVALYPTSASPVAVQSPQDAFLAVQSPGA 75
>AJ250866-1|CAC17704.1| 409|Drosophila melanogaster chromatin
component KLETT protein.
Length = 409
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 213 NASISPLVQYQQGSVFMEDCSCPPYPQEG*PVGPLELQTYRDNFLAFQGDGA 58
NA++ PL+Q + +++ P P+ +Q+ +D FLA Q GA
Sbjct: 23 NATVKPLIQMPLQAANVQEQQSSPVALYPTSASPVAVQSPQDAFLAVQSPGA 74
>AF182444-1|AAF03833.1| 410|Drosophila melanogaster
disco-interacting protein protein.
Length = 410
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 213 NASISPLVQYQQGSVFMEDCSCPPYPQEG*PVGPLELQTYRDNFLAFQGDGA 58
NA++ PL+Q + +++ P P+ +Q+ +D FLA Q GA
Sbjct: 24 NATVKPLIQMPLQAANVQEQQSSPVALYPTSASPVAVQSPQDAFLAVQSPGA 75
>AF175712-1|AAD50505.1| 410|Drosophila melanogaster
dsRBD-containing protein dip1-c protein.
Length = 410
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 213 NASISPLVQYQQGSVFMEDCSCPPYPQEG*PVGPLELQTYRDNFLAFQGDGA 58
NA++ PL+Q + +++ P P+ +Q+ +D FLA Q GA
Sbjct: 24 NATVKPLIQMPLQAANVQEQQSSPVALYPTSASPVAVQSPQDAFLAVQSPGA 75
>AF175711-1|AAD50502.1| 410|Drosophila melanogaster
dsRBD-containing protein dip1-c splice isoform protein.
Length = 410
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 213 NASISPLVQYQQGSVFMEDCSCPPYPQEG*PVGPLELQTYRDNFLAFQGDGA 58
NA++ PL+Q + +++ P P+ +Q+ +D FLA Q GA
Sbjct: 24 NATVKPLIQMPLQAANVQEQQSSPVALYPTSASPVAVQSPQDAFLAVQSPGA 75
>AE014298-3169|AAN09008.1| 409|Drosophila melanogaster CG17686-PB,
isoform B protein.
Length = 409
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 213 NASISPLVQYQQGSVFMEDCSCPPYPQEG*PVGPLELQTYRDNFLAFQGDGA 58
NA++ PL+Q + +++ P P+ +Q+ +D FLA Q GA
Sbjct: 23 NATVKPLIQMPLQAANVQEQQSSPVALYPTSASPVAVQSPQDAFLAVQSPGA 74
>AE014298-3168|AAF45390.2| 409|Drosophila melanogaster CG17686-PA,
isoform A protein.
Length = 409
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 213 NASISPLVQYQQGSVFMEDCSCPPYPQEG*PVGPLELQTYRDNFLAFQGDGA 58
NA++ PL+Q + +++ P P+ +Q+ +D FLA Q GA
Sbjct: 23 NATVKPLIQMPLQAANVQEQQSSPVALYPTSASPVAVQSPQDAFLAVQSPGA 74
>AE014298-3167|AAN09007.1| 410|Drosophila melanogaster CG17686-PD,
isoform D protein.
Length = 410
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 213 NASISPLVQYQQGSVFMEDCSCPPYPQEG*PVGPLELQTYRDNFLAFQGDGA 58
NA++ PL+Q + +++ P P+ +Q+ +D FLA Q GA
Sbjct: 24 NATVKPLIQMPLQAANVQEQQSSPVALYPTSASPVAVQSPQDAFLAVQSPGA 75
>AY089345-1|AAL90083.1| 335|Drosophila melanogaster AT16588p
protein.
Length = 335
Score = 28.7 bits (61), Expect = 6.1
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = +3
Query: 339 LRHGAVTPGDVGRGGSSVIQSRV*GKELDQKVSLLLRTMSQTVIGLTHWWKARPAEVTFC 518
+R +T GDVG S I R + LD + L LR +S GLT + PA+V
Sbjct: 210 MRACLMTTGDVG---SYDISKRTFKRLLDLEEGLPLRFVSSMCAGLTASVLSTPADVIKS 266
Query: 519 SLI*RPKSTASRGISY 566
++ +P + + + Y
Sbjct: 267 RMMNQPVDESGKNLYY 282
>AF218310-1|AAF67101.1| 410|Drosophila melanogaster Ultrabithorax
binding protein 1 protein.
Length = 410
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -2
Query: 213 NASISPLVQYQQGSVFMEDCSCPPYPQEG*PVGPLELQTYRDNFLAFQGDGA 58
NA++ PL+Q + +++ P P+ +Q+ +D FLA Q GA
Sbjct: 24 NATVKPLIQMPLQAANVQEQQSSPVGLYPTSASPVAVQSPQDAFLAVQSPGA 75
>AE014134-1001|AAF52313.1| 335|Drosophila melanogaster CG9064-PA
protein.
Length = 335
Score = 28.7 bits (61), Expect = 6.1
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = +3
Query: 339 LRHGAVTPGDVGRGGSSVIQSRV*GKELDQKVSLLLRTMSQTVIGLTHWWKARPAEVTFC 518
+R +T GDVG S I R + LD + L LR +S GLT + PA+V
Sbjct: 210 MRACLMTTGDVG---SYDISKRTFKRLLDLEEGLPLRFVSSMCAGLTASVLSTPADVIKS 266
Query: 519 SLI*RPKSTASRGISY 566
++ +P + + + Y
Sbjct: 267 RMMNQPVDESGKNLYY 282
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,568,391
Number of Sequences: 53049
Number of extensions: 639490
Number of successful extensions: 1915
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1904
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2317436688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -