Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1836
(583 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 62 4e-10
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 62 4e-10
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 62 4e-10
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 52 2e-07
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 50 2e-06
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 39 0.003
AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical ... 38 0.004
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical... 29 2.4
U41555-9|AAB37034.1| 646|Caenorhabditis elegans Hypothetical pr... 27 9.7
D30651-1|BAA21637.1| 646|Caenorhabditis elegans flavoprotein su... 27 9.7
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 61.7 bits (143), Expect = 4e-10
Identities = 33/101 (32%), Positives = 53/101 (52%)
Frame = -3
Query: 317 VRQELRLLDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPI 138
+R LR K++G D I A LK+C + +T + ++ VP WKT+ I
Sbjct: 381 IRYALRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLI 440
Query: 137 PKKGDRSDPSNYRPIAITSLLSKVMERIINIQLLKYLEDRQ 15
KKGDR + NYRPI + +L KV + + ++ + L++ Q
Sbjct: 441 FKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQ 481
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 61.7 bits (143), Expect = 4e-10
Identities = 33/101 (32%), Positives = 53/101 (52%)
Frame = -3
Query: 317 VRQELRLLDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPI 138
+R LR K++G D I A LK+C + +T + ++ VP WKT+ I
Sbjct: 552 IRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLI 611
Query: 137 PKKGDRSDPSNYRPIAITSLLSKVMERIINIQLLKYLEDRQ 15
KKGDR + NYRPI + +L KV + + ++ + L++ Q
Sbjct: 612 FKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQ 652
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 61.7 bits (143), Expect = 4e-10
Identities = 33/101 (32%), Positives = 53/101 (52%)
Frame = -3
Query: 317 VRQELRLLDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPI 138
+R LR K++G D I A LK+C + +T + ++ VP WKT+ I
Sbjct: 291 IRHVLRSFPNGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLI 350
Query: 137 PKKGDRSDPSNYRPIAITSLLSKVMERIINIQLLKYLEDRQ 15
KKGDR + NYRPI + +L KV + + ++ + L++ Q
Sbjct: 351 FKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQ 391
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 52.4 bits (120), Expect = 2e-07
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = -3
Query: 275 GPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPIPK-KGDRSDPSNYR 99
GPD I + ++ L LY +S +TN +P WK A+V IPK K D + S+YR
Sbjct: 347 GPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKANVIMIPKPKKDPAIASSYR 406
Query: 98 PIAITSLLSKVMERII 51
PI++ S ++K++E+ I
Sbjct: 407 PISLLSPIAKLLEKAI 422
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 49.6 bits (113), Expect = 2e-06
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Frame = -3
Query: 491 LPPVGKSNDSLAHSAKEKADLLVKLFASYSTLDDGGA-------TPPNIS----RCDSSM 345
+P + N S+ + + EK+++ K+FAS+ + D + +P + S + +S+
Sbjct: 707 VPSIILDNKSIVNDS-EKSEIFAKIFASHYSDDSSQSQNSLHSPSPTSHSSLQNQTSTSL 765
Query: 344 PEIRITQRAVRQELRLLDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSS 165
+ L L P C +VLK CA L L+ +Y+ S+ +++P
Sbjct: 766 HLDSFQPYMIESVLSKLPPKCGFSPHCANYLVLKKCATPLAFPLSIIYKQSFADSKIPDC 825
Query: 164 WKTAHVHPIPKKG 126
WK A + PIPKKG
Sbjct: 826 WKKAIIIPIPKKG 838
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 38.7 bits (86), Expect = 0.003
Identities = 39/142 (27%), Positives = 52/142 (36%), Gaps = 2/142 (1%)
Frame = -3
Query: 470 NDSLAHSAKEKADLLVKLFASYSTLDDGGATPPNISRCDSSMPEIRITQRAVRQELRLLD 291
+D L KA +F+S + P N + +I Q V+Q L
Sbjct: 715 DDKLISRNSGKASCFASIFSSKFKDQNSTQIPENTDNKTINASQI-FEQSMVKQALE--H 771
Query: 290 VHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRVPSSWKTAHVHPIPKKGDR--S 117
V D +VL CA L L+R+ R + T P SW V P P K
Sbjct: 772 VTPRFHFDKTNILVLNNCANSLAAPLSRILRNIFETEDYPESWNHCIVIPDPPKIRELIR 831
Query: 116 DPSNYRPIAITSLLSKVMERII 51
DP NY VME++I
Sbjct: 832 DPKNYALNYYFDPFLGVMEKVI 853
>AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical
protein F21E9.5 protein.
Length = 864
Score = 38.3 bits (85), Expect = 0.004
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 4/137 (2%)
Frame = -3
Query: 521 AAEGNFCRSSLPPVGKSNDSLAHSAKEKADLLVKLFASYSTLDDGGATPP--NISRCDSS 348
A + N +S +P + S+ +++EK + +++F Y++L TPP +
Sbjct: 331 ARDLNEYKSFIPSLKCSSTGERITSREKMEREIEMF--YTSLFRSRKTPPPPQLPTPPPI 388
Query: 347 MPEIR--ITQRAVRQELRLLDVHKSSGPDCIPAVVLKTCAPELTPALTRLYRLSYNTNRV 174
M E +R + K++G D I A LK+C + +T + + +
Sbjct: 389 MAEPLPPFLFGEIRAAINSFPNGKAAGSDKITADFLKSCGDYVIRLITGRFNRYLESGNI 448
Query: 173 PSSWKTAHVHPIPKKGD 123
P WKT+ I KKGD
Sbjct: 449 PKDWKTSKTTLIFKKGD 465
>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
protein Y47G6A.29 protein.
Length = 2460
Score = 29.1 bits (62), Expect = 2.4
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = -3
Query: 467 DSLAHSAKEKADLLVKLFASYSTLDDGGATPPNISRCDSSMPEIRITQRAVRQELRLLD- 291
DS+ EK D +KL AS+ + G P R + +R+ VR E+ L
Sbjct: 702 DSMTSVDDEKIDDPIKLKASFDKTNANGMKPVEYFRTMNVDVTVRVCN--VRAEMLLYSP 759
Query: 290 -VHKSSGPDCIPAVVLKTCAPELTPALTR 207
+ + + P+ +P V ++ A E+ T+
Sbjct: 760 AIDEGAEPEKVPVVFVEEVAVEVKKTKTQ 788
>U41555-9|AAB37034.1| 646|Caenorhabditis elegans Hypothetical
protein C03G5.1 protein.
Length = 646
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 191 YNTNRVPSSWKTAHVHPIPKKGDRSDPSNY 102
YN VP+++K ++ PKKGD P Y
Sbjct: 389 YNMGGVPTNYKGQVLNYTPKKGDEVVPGLY 418
>D30651-1|BAA21637.1| 646|Caenorhabditis elegans flavoprotein
subunit of complex II protein.
Length = 646
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 191 YNTNRVPSSWKTAHVHPIPKKGDRSDPSNY 102
YN VP+++K ++ PKKGD P Y
Sbjct: 389 YNMGGVPTNYKGQVLNYTPKKGDEVVPGLY 418
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,046,496
Number of Sequences: 27780
Number of extensions: 302470
Number of successful extensions: 895
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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