Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1835
         (637 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0P6N7 Cluster: Plasma memebrane H+-ATPase; n=1; Planta...    45   0.001
UniRef50_Q5C0A4 Cluster: SJCHGC09205 protein; n=1; Schistosoma j...    42   0.012
UniRef50_Q24333 Cluster: Elastin like protein; n=1; Drosophila m...    42   0.012
UniRef50_Q4YAZ4 Cluster: Putative uncharacterized protein; n=1; ...    40   0.038
UniRef50_Q86SD1 Cluster: Calumenin homologue; n=2; Eukaryota|Rep...    36   0.62 

>UniRef50_Q0P6N7 Cluster: Plasma memebrane H+-ATPase; n=1;
          Plantago major|Rep: Plasma memebrane H+-ATPase -
          Plantago major (Common plantain)
          Length = 106

 Score = 45.2 bits (102), Expect = 0.001
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +2

Query: 11 SPAVAAALELVDPPGCRNSA 70
          SPAVAAALELVDPPGCRNSA
Sbjct: 4  SPAVAAALELVDPPGCRNSA 23


>UniRef50_Q5C0A4 Cluster: SJCHGC09205 protein; n=1; Schistosoma
          japonicum|Rep: SJCHGC09205 protein - Schistosoma
          japonicum (Blood fluke)
          Length = 215

 Score = 41.9 bits (94), Expect = 0.012
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +2

Query: 11 SPAVAAALELVDPPGCRNSA 70
          S AVAAALELVDPPGCRNSA
Sbjct: 4  STAVAAALELVDPPGCRNSA 23


>UniRef50_Q24333 Cluster: Elastin like protein; n=1; Drosophila
          melanogaster|Rep: Elastin like protein - Drosophila
          melanogaster (Fruit fly)
          Length = 110

 Score = 41.9 bits (94), Expect = 0.012
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +2

Query: 11 SPAVAAALELVDPPGCRNSA 70
          S AVAAALELVDPPGCRNSA
Sbjct: 3  STAVAAALELVDPPGCRNSA 22


>UniRef50_Q4YAZ4 Cluster: Putative uncharacterized protein; n=1;
          Plasmodium berghei|Rep: Putative uncharacterized
          protein - Plasmodium berghei
          Length = 89

 Score = 40.3 bits (90), Expect = 0.038
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +2

Query: 11 SPAVAAALELVDPPGCRNS 67
          S AVAAALELVDPPGCRNS
Sbjct: 10 STAVAAALELVDPPGCRNS 28


>UniRef50_Q86SD1 Cluster: Calumenin homologue; n=2; Eukaryota|Rep:
           Calumenin homologue - Ciona intestinalis (Transparent
           sea squirt)
          Length = 308

 Score = 36.3 bits (80), Expect = 0.62
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +2

Query: 11  SPAVAAALELVDPPGCR 61
           S AVAAALELVDPPGCR
Sbjct: 123 STAVAAALELVDPPGCR 139


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 496,477,730
Number of Sequences: 1657284
Number of extensions: 8024326
Number of successful extensions: 12297
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12294
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)