Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1835
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    27   1.7  
SPAC25B8.18 |||mitochondrial electron carrier |Schizosaccharomyc...    26   5.2  

>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -1

Query: 283 GSVFR*LDGLNKK*THVKLCIEFTSMFIIHGHNLNYFYGSIT*DFFPTYADSLERLFQLH 104
           G  ++  D ++K+   +K+  E     +I G  LNYF   I  + F    D+ E  FQ H
Sbjct: 141 GGAYKFYDRMSKQ-LDIKVIREDEMECLIMG--LNYFVSCIPREVFVLDLDTCELTFQNH 197

Query: 103 LN 98
           LN
Sbjct: 198 LN 199


>SPAC25B8.18 |||mitochondrial electron carrier |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 630 KKTQVIF*RKRQTIVNERLRHYYVLIIYMRSMFNTIRNYKGQVE 499
           K+   +F +KRQT+V ++L  Y   +I      N + ++K QVE
Sbjct: 7   KRILTLFTKKRQTLVEQKLTEY---MIAGEKTDNQMLHFKLQVE 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,017
Number of Sequences: 5004
Number of extensions: 36204
Number of successful extensions: 59
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)