Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1834
         (600 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    23   2.6  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    23   2.6  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   3.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.0  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   7.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   7.9  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 141 ETIMYRRVGTKFFKAVITAIDTTVF 67
           ET + R V  +FF  VI  I  TVF
Sbjct: 128 ETNLLRNVSVQFFVYVILYILATVF 152


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 141 ETIMYRRVGTKFFKAVITAIDTTVF 67
           ET + R V  +FF  VI  I  TVF
Sbjct: 128 ETNLLRNVSVQFFVYVILYILATVF 152


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 394 TPNFFQMLHPNDLLLQPLHI 335
           T +F  M   ND ++QP H+
Sbjct: 575 TYDFHNMSFENDFIIQPKHL 594



 Score = 21.4 bits (43), Expect = 6.0
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +2

Query: 2   FYKHFRVNFKYFSIKLPNFFSVKTVVSIAVITALKNLVPTRLYIIVSWGLT 154
           FY     +F YF     N F   + V+     +L +L     Y I  WG++
Sbjct: 87  FYLEATDDFAYFLEVSNNNFKTYSNVTTCSYYSLDDLSEDTFYDIRLWGVS 137


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 294  FFILNTNLNLIIPV 253
            F I+  NLNL++PV
Sbjct: 1601 FQIILANLNLVVPV 1614


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -1

Query: 459 KGFSPADVRTSSPDIPGNTTSSLP 388
           KGF P          P +T SSLP
Sbjct: 62  KGFHPWKKSPQGAPSPSSTPSSLP 85


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 595 TRPLTPVVLHPI 560
           T PLTPVV  PI
Sbjct: 221 TVPLTPVVSEPI 232


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,669
Number of Sequences: 336
Number of extensions: 2689
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)