Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1834
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    28   0.91 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.1  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    27   2.1  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    27   2.8  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.8  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   3.7  
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    25   6.4  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    25   8.5  

>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 10  TFSRKFQIFFNQITELFFSENSGVDC 87
           TF  +F   FN +   FF  + G+DC
Sbjct: 131 TFGNEFHSAFNNLVNSFFELSKGIDC 156


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 403  NLFTPNFFQMLHPND 359
            N F+P F ++LHPND
Sbjct: 1249 NAFSPFFLELLHPND 1263


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 335 NMKRLKQQVIGMQHLEEIGSEEVVLPGISGEEVLTSAGENPFD 463
           NMK + + ++G  +   IGS    LPG S  + +   G  P D
Sbjct: 314 NMKNIDEAIVGDTY-STIGSNVEALPGFSIPQSMVYVGAFPLD 355


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 421 RYTW*YNLFTPNFFQMLHPNDLLLQPLHIDHQLY 320
           +Y W +N  T +  +  H N+L LQ   + H+ Y
Sbjct: 69  KYVWSFNNITKSVIRNEHGNNLTLQEELLRHEAY 102


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 292 EIETGQYEEYITDDQYEEVEAASHWDAASGRN 387
           E E   YEE   ++  E  E +SH+  +SG N
Sbjct: 786 ETEPSHYEEEEEEEPEERREESSHFSESSGNN 817


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -1

Query: 234  SANFHFTHNLLIHHLDGALYLSCNKSSVRPQETIMYRRVGTKFFKAVITAIDTTVFT 64
            +++++  ++ L   +DG  YLSCN +   P + +     G+     V T   TT FT
Sbjct: 888  ASSYYCDNDQLCPIIDGVDYLSCNGACYNPSQYVC--SDGSLSPNTVTTTKATTTFT 942


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 290 KK*KRASMRNI*LMINMKRLKQQVIGMQHLEEIGSEEVV 406
           K+ KR SMR I  + N K   + + G      +G EEV+
Sbjct: 274 KRKKRVSMRYIGRLTNGKVFDKNITGKPFTFNLGLEEVI 312


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 295 IETGQYEEYITDDQYEEVEAASHW 366
           I  G Y  Y T   Y + EA  HW
Sbjct: 42  ISIGPYSGYNTPPMYGDFEAQRHW 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,056
Number of Sequences: 5004
Number of extensions: 44257
Number of successful extensions: 122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)