Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1834
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0774 - 19457218-19457517,19457575-19457673,19457679-194577...    32   0.40 
05_05_0338 + 24204301-24206262,24206337-24206495,24206864-242070...    31   0.93 
02_01_0541 - 3950336-3950353,3950660-3951061,3951174-3951431,395...    30   1.6  
04_04_0051 - 22371490-22371658,22372333-22372778,22373880-223740...    28   5.0  
04_04_0253 - 23944279-23944358,23944634-23944711,23945118-239452...    27   8.7  

>04_03_0774 -
           19457218-19457517,19457575-19457673,19457679-19457726,
           19458382-19458482,19458807-19458918,19459132-19459515,
           19459952-19460128
          Length = 406

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +1

Query: 253 DGDDQVQVGVKYEEIETG-QYEEYITDDQYEEVEAASH 363
           +G+D      +Y+E ++  +Y+EY +DD+Y+EV + ++
Sbjct: 95  EGEDTYDSDDEYDEYDSDDEYDEYDSDDEYDEVSSVNN 132



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 307 QYEEYITDDQYEEVEAASHWDAASGRN 387
           +Y+EY +DD+Y+E ++   +D  S  N
Sbjct: 105 EYDEYDSDDEYDEYDSDDEYDEVSSVN 131


>05_05_0338 +
           24204301-24206262,24206337-24206495,24206864-24207035,
           24207544-24207842,24208301-24208355,24208438-24208487,
           24208522-24208827
          Length = 1000

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 184 SIKMMNQEIMCEVEIGTHGAIEI-DGDDQVQVGVKYEEIETGQYEEYITDDQYEEVEAAS 360
           S+K M QE++     GT+ A  + + D  + +G+   E+     +  I DD +E +   +
Sbjct: 670 SLKSMYQEVVAVTGDGTNDAPALHESDIGLAMGITGTEVAKESADVIIMDDNFETIVNVA 729

Query: 361 HWDAA 375
            W  A
Sbjct: 730 RWGRA 734


>02_01_0541 -
           3950336-3950353,3950660-3951061,3951174-3951431,
           3951554-3951754,3951861-3952203,3952286-3952344,
           3952757-3953082,3953283-3953745,3954180-3954794,
           3955600-3955896
          Length = 993

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -1

Query: 261 IPVYFYSSMSANFHFTHNLLIHHLDGALYLSCNKSSVRPQETIMYRRVGTKFFKAVITAI 82
           IPV+F   +    HFT +LL+ HL G  Y+      +    +I+   VG +F+ A   A+
Sbjct: 316 IPVFFIRMVCPRIHFTRSLLLMHL-GPFYIGDLLKWI--LVSIVQFGVGKRFYVAAYRAL 372


>04_04_0051 -
           22371490-22371658,22372333-22372778,22373880-22374054,
           22374134-22374240,22374358-22374646,22374942-22375075,
           22375228-22375423,22375611-22375719,22375839-22375965
          Length = 583

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 208 IMCEVEIGTHGAIEIDGDDQVQVGVKYEEIETGQYEEYITDDQY 339
           I+  + +G +GA+ +  +   Q GV Y      +++EY  D  Y
Sbjct: 269 IVSSIFVGLYGAVVVYQEKSFQRGVSYVVAMVAEFDEYTNDWLY 312


>04_04_0253 -
           23944279-23944358,23944634-23944711,23945118-23945235,
           23945496-23945594,23946615-23947418
          Length = 392

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 213 HNLLIHHLDGALYLSCNK 160
           H+ + H LDG  YLSC K
Sbjct: 272 HSTMTHFLDGDCYLSCEK 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,159,693
Number of Sequences: 37544
Number of extensions: 265051
Number of successful extensions: 729
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)