Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1834
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.57 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.57 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.3  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 500 PCCWWK 483
           PCCWWK
Sbjct: 487 PCCWWK 492


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 500 PCCWWK 483
           PCCWWK
Sbjct: 540 PCCWWK 545


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 406 YNLFTPNFFQMLHPNDLLLQPLHIDHQLYIP 314
           +N+  PN +  + PN  +L  + I   L  P
Sbjct: 131 HNIIMPNVYIRIFPNGSVLYSIRISLTLSCP 161


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 406 YNLFTPNFFQMLHPNDLLLQPLHIDHQLYIP 314
           +N+  PN +  + PN  +L  + I   L  P
Sbjct: 131 HNIIMPNVYIRIFPNGSVLYSIRISLTLSCP 161


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 13/66 (19%), Positives = 29/66 (43%)
 Frame = -1

Query: 252 YFYSSMSANFHFTHNLLIHHLDGALYLSCNKSSVRPQETIMYRRVGTKFFKAVITAIDTT 73
           +FY    A+ +  H L     DG   ++ +   +    T+ +  + +  F+    A+ T+
Sbjct: 352 FFYPDPLASKYELHGLKFQWTDGIFGMALSPVDIHDDRTLFFHPMSS--FREF--AVSTS 407

Query: 72  VFTEKK 55
           +  +KK
Sbjct: 408 ILGDKK 413


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,741
Number of Sequences: 438
Number of extensions: 3005
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)