Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1827
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb...    29   0.63 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.5  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    26   4.5  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   4.5  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   5.9  

>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 84  LTYFHICTIKCKTPYYLISNKYKCETIEIPIS 179
           L  + + TI+  TP YL+S K K + +++ +S
Sbjct: 323 LETYDVTTIRASTPMYLLSRKIKAQGVKMVLS 354


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +3

Query: 351 FLHPFTTADLFCF----ILCYYLFIFITNKGRYELY*FTRQVFF*ISFNNIGLLY 503
           FLHPFT ++L  F    +  ++L  F++    +    F  Q+F  + F++  +L+
Sbjct: 101 FLHPFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFI-VYFSSFPILH 154


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +2

Query: 332 LIQEYILSSSLHYSRLILFYSVLLFIYFYHKQRQI*IVLIHSTS 463
           L+   + +++ ++ +  L  +  L  YF+H+QRQ   +LI + +
Sbjct: 109 LVYPSVFTTAFYHQKWALRLNPCLPTYFFHRQRQCVTLLIRNAN 152


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 226  KKKLQD-YKQFITVYYLERSQGLSH-SLIRLKFFSPDFDSRIYSFFIPSLQQTY 381
            K K++D Y  F T+ Y++  Q     +L  L+      D RI +F+I SLQ+ +
Sbjct: 1152 KYKIKDTYATFQTLNYIQNQQPTKWPNLSCLENLMIPHDGRISAFYIASLQKYF 1205


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 499 NNPILLKLI*KKTCRVNQYNSYLPLFVI 416
           N+P+L   I  K  +VN+YN+ LP+F I
Sbjct: 754 NSPVL-GTIHLKDAQVNRYNANLPIFSI 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,959
Number of Sequences: 5004
Number of extensions: 57036
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)