Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1827
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0091 + 27640863-27641788,27643186-27643444,27643993-276440...    31   1.1  
01_07_0352 - 42958903-42959010,42959928-42960142,42960651-429607...    30   1.5  

>05_07_0091 +
           27640863-27641788,27643186-27643444,27643993-27644070,
           27644324-27644398
          Length = 445

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 75  RKILTYFHICTIKCKTPYYLISNKYKCETIEIPISWRKVAW 197
           RK+L    I T++ +  YYL    +  +T++ P+ W  V W
Sbjct: 194 RKLLIIVTITTVRPQQAYYLNRLAHVLKTVQSPLLWLVVEW 234


>01_07_0352 -
           42958903-42959010,42959928-42960142,42960651-42960773,
           42960884-42960973,42961057-42961164,42961623-42961808,
           42961858-42961923,42962312-42962495
          Length = 359

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/74 (25%), Positives = 36/74 (48%)
 Frame = +1

Query: 244 YKQFITVYYLERSQGLSHSLIRLKFFSPDFDSRIYSFFIPSLQQTYSVLFCVIIYLFLSQ 423
           YK+F+  + +   +G+     ++   +PD +   YSF I   +  Y++L C        +
Sbjct: 169 YKKFLG-FQVVGGEGVKFVFSKIDIQNPDNE---YSFCIKLNKDRYNLLQCTPFLKDSEE 224

Query: 424 TKADMNCTDSLDKF 465
              D+NC++ L KF
Sbjct: 225 LVKDLNCSNDLFKF 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,008,532
Number of Sequences: 37544
Number of extensions: 292588
Number of successful extensions: 440
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)