Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1827
(689 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117207-13|CAB60393.2| 327|Caenorhabditis elegans Hypothetical... 31 0.59
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 30 1.8
AY724774-1|AAU21474.1| 750|Caenorhabditis elegans UNC-89-B prot... 30 1.8
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 30 1.8
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 30 1.8
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 30 1.8
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 30 1.8
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 30 1.8
AF098985-7|AAC67417.1| 306|Caenorhabditis elegans Hypothetical ... 28 7.2
Z82276-6|CAJ15166.1| 305|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z81137-3|CAB03471.1| 338|Caenorhabditis elegans Hypothetical pr... 27 9.6
>AL117207-13|CAB60393.2| 327|Caenorhabditis elegans Hypothetical
protein Y60A3A.4 protein.
Length = 327
Score = 31.5 bits (68), Expect = 0.59
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +1
Query: 265 YYLERSQGLSHSL-IRLKFFSPDFDSRIYSFFIPSLQQTYS---VLFCVIIYLFLSQTKA 432
Y E+ + + + R FF+ D+++YS I SL +LF ++I+ +L+QT++
Sbjct: 163 YTFEKIPNIPNDIPFRPGFFALSTDNQVYSICIISLIFVVCPQIILFVLLIFRYLTQTRS 222
Query: 433 DMNCTDSLDKFFF 471
T L FF
Sbjct: 223 QSPATLRLQLLFF 235
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -3
Query: 657 LTIRQQNPGDRVKFACLP 604
LTIR+ PGD V F CLP
Sbjct: 5931 LTIRRAKPGDSVTFECLP 5948
>AY724774-1|AAU21474.1| 750|Caenorhabditis elegans UNC-89-B
protein.
Length = 750
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -3
Query: 657 LTIRQQNPGDRVKFACLP 604
LTIR+ PGD V F CLP
Sbjct: 10 LTIRRAKPGDSVTFECLP 27
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -3
Query: 657 LTIRQQNPGDRVKFACLP 604
LTIR+ PGD V F CLP
Sbjct: 5291 LTIRRAKPGDSVTFECLP 5308
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -3
Query: 657 LTIRQQNPGDRVKFACLP 604
LTIR+ PGD V F CLP
Sbjct: 5931 LTIRRAKPGDSVTFECLP 5948
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -3
Query: 657 LTIRQQNPGDRVKFACLP 604
LTIR+ PGD V F CLP
Sbjct: 5931 LTIRRAKPGDSVTFECLP 5948
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -3
Query: 657 LTIRQQNPGDRVKFACLP 604
LTIR+ PGD V F CLP
Sbjct: 5291 LTIRRAKPGDSVTFECLP 5308
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -3
Query: 657 LTIRQQNPGDRVKFACLP 604
LTIR+ PGD V F CLP
Sbjct: 5931 LTIRRAKPGDSVTFECLP 5948
>AF098985-7|AAC67417.1| 306|Caenorhabditis elegans Hypothetical
protein C08G5.6 protein.
Length = 306
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 345 IFFLHPFTTAD--LFCFILCYYLFIFITNKGRYELY*FTRQ 461
+FFLH +FCF+ + F+F++ K R +L F Q
Sbjct: 1 MFFLHVIGHLGRRVFCFVFFWNFFLFLSKKTRQKLQFFPLQ 41
>Z82276-6|CAJ15166.1| 305|Caenorhabditis elegans Hypothetical
protein K03D3.12 protein.
Length = 305
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 406 YLFLSQTKADMNCTDSLDKFFFKLVSTILGCYI 504
YLF+ T + + S FFFKL++ ++GC +
Sbjct: 74 YLFIPLTASVYMTSVSESGFFFKLLNFLIGCVL 106
>Z81137-3|CAB03471.1| 338|Caenorhabditis elegans Hypothetical
protein W02D9.4 protein.
Length = 338
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 328 DFDSRIYSFFIPSLQQTYSVLFCVIIYLF 414
+ D+ IY F+P T+ V C +YLF
Sbjct: 227 EMDNIIYIRFLPDSNSTFFVFSCYSLYLF 255
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,086,352
Number of Sequences: 27780
Number of extensions: 315716
Number of successful extensions: 696
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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