Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1827
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   4.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.4  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 622 DSVPWVLLTNRERR 663
           + +PWV+L + ERR
Sbjct: 85  NGIPWVILGHSERR 98


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 5/18 (27%), Positives = 9/18 (50%)
 Frame = +3

Query: 171 PISWRKVAWAMMLSTVCI 224
           P  W K+ W +    +C+
Sbjct: 487 PCCWWKICWTITTPAICV 504


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 5/18 (27%), Positives = 9/18 (50%)
 Frame = +3

Query: 171 PISWRKVAWAMMLSTVCI 224
           P  W K+ W +    +C+
Sbjct: 540 PCCWWKICWTITTPAICV 557


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +2

Query: 341 EYILSSSLHYSRLILFY 391
           +Y+L  S ++SRL++F+
Sbjct: 177 DYMLEKSGNFSRLVVFF 193


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 512  TTIRTRNADNKTKFKP 559
            T IR   ADNK + KP
Sbjct: 1113 TNIRPGTADNKPQLKP 1128


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +3

Query: 528 ETLIIKXXXXXXXXDKCSQKSIDPKSVDKRI*LCP 632
           ETL  K         KCSQ S+   +      LCP
Sbjct: 349 ETLNTKCNTLERTPSKCSQTSVHYSNGQTHSQLCP 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,859
Number of Sequences: 438
Number of extensions: 4450
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)