Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1824
         (707 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   3.2  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   4.3  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   5.6  

>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 412 IGLIDIKTGQLKEPKTGKLVDIKKAAKIGL 323
           I ++DI     +   TG    I +AAK+GL
Sbjct: 402 IAIVDITLDDFRGLCTGNKYPILRAAKLGL 431


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 20/80 (25%), Positives = 29/80 (36%)
 Frame = -1

Query: 539 GSQITSQTNIIQRCSC*ENYRS*ICNIQCRGC*TSYFTRSCKNRAY*HQNRTIKRT*NR* 360
           G     + N  Q C C E +   +CNI    C        C+N      +R      N  
Sbjct: 80  GGTCVDKINAFQ-CICKEGWEGALCNINTDDC----SPNPCRNNGS-CVDRIADFECNCK 133

Query: 359 IGRYKESCKNWASRCDRSSC 300
            G   ++C    S CD ++C
Sbjct: 134 NGWKGKTCSLKDSHCDHTTC 153


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 178 DKVTEPKKVIQRNIEVEPKVKDAKVS 101
           DK+ +P+KV+      EP   D K+S
Sbjct: 90  DKLEKPRKVLPNFKTDEPICPDGKLS 115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,842
Number of Sequences: 336
Number of extensions: 2582
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)