Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1824
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    29   0.86 
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   1.1  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    28   1.5  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   2.0  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    27   2.0  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   2.0  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    27   2.6  
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   3.5  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    27   3.5  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    26   4.6  
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3...    26   4.6  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.1  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   6.1  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   6.1  
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    26   6.1  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    26   6.1  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    26   6.1  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   8.0  

>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 134 FNITLNYFFRLCNLVNSRFISGHNSTWFLKHLVLLWLHQ 250
           F + + Y   L  L+N       N+TW   ++VLLWL Q
Sbjct: 107 FPVGVQYIKELYTLLNE----SSNNTWHFHYIVLLWLSQ 141


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = +2

Query: 104 YFSIFHFW-FYF-NITLNYFFRLC 169
           YFS+F F+ F F ++  N+FFRLC
Sbjct: 113 YFSLFSFFSFLFTSLHFNFFFRLC 136


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 23/98 (23%), Positives = 41/98 (41%)
 Frame = +2

Query: 98  NTYFSIFHFWFYFNITLNYFFRLCNLVNSRFISGHNSTWFLKHLVLLWLHQFTFHRLSSL 277
           +++ S   FW YF   L+    + + V  +  S   S  +LK + ++ L    F  L  +
Sbjct: 99  SSFSSTSKFWRYFAYLLSLQI-VIDFVLYKLSSAMASLHYLKFVKIIALSYICFSSLIRI 157

Query: 278 YYCHTSEYRSCDHSD*PNFCSFLYIYQFTCFRFF*LSC 391
            +C T   R    S    F + L+ ++ T  R +   C
Sbjct: 158 CHCWTYFIRIMGLSSLNKFVNLLHDFETTSNRVYSQIC 195


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -2

Query: 202 VSADKATVDKVTEPKKVIQ-RNIEVEPKVKDAKVSVKDI--PSRPSISEDPKKDVSKEKL 32
           V   K     V++PK+  + +    EP+VK    S   +  PS+    ++ +K+ +  + 
Sbjct: 425 VETPKPEAQPVSKPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQP 484

Query: 31  KTEITPTEK 5
           K E TP EK
Sbjct: 485 KREKTPVEK 493



 Score = 26.2 bits (55), Expect = 4.6
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
 Frame = -2

Query: 244 QPKQDKVFEEPSRIVSADKAT--VDKVTEP-KKVIQRNIEVEPKV---KDAKVSV-KDIP 86
           +PK+    ++PS+       T    KV EP KK  + N + E  V   K  K  V K  P
Sbjct: 437 KPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFP 496

Query: 85  ---SRP-SISEDPKKDVSKEKLKTEITPTEKK 2
              S P + SED KK+ S+EK K E++    K
Sbjct: 497 KPASSPVTFSEDVKKEPSEEK-KLEVSDEAPK 527


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 130 EPKVKDAKVSVKDIPSRPSISEDPKKDVSKEKLKTEITPT 11
           +P   D K        +PS  E+   D+   K+KT I P+
Sbjct: 238 QPSSSDDKAKGSTSKDQPSEEEEKTSDIQDRKIKTPIKPS 277


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -2

Query: 199 SADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKDVSKEKLKT 26
           ++ K   D+ + P +  Q+ +EV  + KD+K        + ++ E PKK   K   KT
Sbjct: 273 ASSKRKSDEESLPSQKKQKKVEVAKESKDSKQQNVSDKKQVTVKEVPKKLSVKNAAKT 330


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 544 FKDPKSPHKLISFKDALAKKIIDPESVIYNVEAAK 440
           FK+PK  ++++S +  L  KIIDP+  I   E  K
Sbjct: 211 FKNPKCVNEVMSKEHHLDGKIIDPKRAIPREEQEK 245


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 193 DKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKD 50
           DK +       KKV Q+N E+E K  D K+S  ++P +  +++   KD
Sbjct: 21  DKKSQSLEEHEKKVQQKNEELEKKAAD-KISRDELPEK-QLAQSNDKD 66


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 505 KDALAKKIIDPESVIYNVEAAKPVTLQEAVKIGLIDIKTGQ-LKEP 371
           K ALA   I  +S +Y+V  A+ +T     K+   D+  G  LK+P
Sbjct: 264 KVALASCYISDDSSLYSVSLARDITEAIQNKLNFSDVNFGDLLKKP 309


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 220 QTPCLALVASIYFSPLELPVLLPYQRVQELRSQRL 324
           QTPCL  V   + +P    +   + R+Q L  QRL
Sbjct: 241 QTPCLHSVPDAFTNPDVATLYQKFLRLQSLEHQRL 275


>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 216 NQVELCPLIKRLLTRLQS 163
           N+V+LCPL++  +TR+ S
Sbjct: 319 NRVQLCPLVRSTVTRILS 336


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/53 (22%), Positives = 23/53 (43%)
 Frame = +2

Query: 125 WFYFNITLNYFFRLCNLVNSRFISGHNSTWFLKHLVLLWLHQFTFHRLSSLYY 283
           WF++ +T+ +FF+      S  +S            L W H+F    L+ + +
Sbjct: 270 WFFYMLTIIFFFKEVTADKSEKVSQQKENDDEDRPKLSWKHKFLLFFLAEVAF 322


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 336 AAFFISTNLPVLGSFNCPVLMSISPIFTASCKVTGLAASTLYITDSGS 479
           ++ F+S    +  S   P    +SP  T++  +  LAASTL I  SGS
Sbjct: 154 SSIFLSNWSTIFSSNASPTDSQLSPTHTST--IAELAASTLSIFPSGS 199


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = -2

Query: 247 MQPKQDKVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKV-SVKDI-PSRPS 74
           +QP Q   + +PS  V   +  V     P + +Q     +P      V +VK   P++PS
Sbjct: 393 IQPVQSTQYYQPSSPVQPVQNGVP--APPMQPVQSTQYYQPSSPVQPVQNVKPAQPAQPS 450

Query: 73  ISEDPKKDVSKEKLKTEITPT 11
           + +  K+ V +   + +ITPT
Sbjct: 451 LEDAAKRRVEEMLRQMDITPT 471


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
 Frame = -2

Query: 643 KPDSSEPSLKKKELEMLDLNEAFELLFDERTQKFKDPKSPH------KLISFKDALAKKI 482
           +P  ++PSL  + +   DL E F+ + +        P SP+      +++SF    +   
Sbjct: 200 RPGKNQPSLNFENISKKDLTEEFKQVIENLMNNSIIPGSPYIEVKNERIVSFLVLASLCT 259

Query: 481 IDPE 470
           +DP+
Sbjct: 260 VDPQ 263


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -2

Query: 166 EPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDP 59
           EP+K ++    +    K + V+V+++P+ P   +DP
Sbjct: 305 EPEKEVESTPSILQNFKVSLVNVENVPNEPFKRQDP 340


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 216 NQVELCPLIKRLLTRL 169
           NQVELC +I R+LT +
Sbjct: 395 NQVELCKIIHRMLTEV 410


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 17/70 (24%), Positives = 25/70 (35%)
 Frame = +2

Query: 113 IFHFWFYFNITLNYFFRLCNLVNSRFISGHNSTWFLKHLVLLWLHQFTFHRLSSLYYCHT 292
           +FH   YF  TL     +C   +S  +S      FLK L    +      ++      H 
Sbjct: 89  VFHIG-YFKATLTILQNICKDCSSVLLSDQEKRQFLKDLRRPGIDNLRRSQICKRINDHC 147

Query: 293 SEYRSCDHSD 322
            + R C   D
Sbjct: 148 KKMRRCSKCD 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,271,482
Number of Sequences: 5004
Number of extensions: 42400
Number of successful extensions: 240
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)