Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1824
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0033 - 7585267-7586028 34 0.096
08_01_0058 + 388989-389102,389226-389337,389457-389483,389787-38... 33 0.17
02_04_0090 - 19643182-19643322,19644192-19644335,19644563-196446... 32 0.51
04_03_0850 - 20269047-20270595,20270708-20270751,20271248-202713... 31 1.2
07_01_0780 + 6047375-6047494,6047603-6047713,6047804-6047926,604... 29 2.7
03_04_0229 - 19018521-19018927,19019132-19019795 29 3.6
08_02_0800 + 21330446-21330722,21331040-21331182,21331925-213319... 29 4.8
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 28 6.3
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 28 6.3
01_06_0246 + 27845898-27846001,27846235-27846237,27846472-278467... 28 6.3
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 28 8.4
03_02_0404 - 8165211-8165318,8165397-8165733,8166031-8166242,816... 28 8.4
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295... 28 8.4
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 28 8.4
>05_03_0033 - 7585267-7586028
Length = 253
Score = 34.3 bits (75), Expect = 0.096
Identities = 26/80 (32%), Positives = 35/80 (43%)
Frame = -2
Query: 244 QPKQDKVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISE 65
+P + E S S K+ TEPK Q + EPK ++K K P R S S+
Sbjct: 158 EPNPETKAEPKSEPKSEPKSEPTPQTEPKAESQPEPKTEPK-SESKAEPK--PERKSYSK 214
Query: 64 DPKKDVSKEKLKTEITPTEK 5
+ SK + KTE P K
Sbjct: 215 SKPEPESKPEAKTEPQPESK 234
>08_01_0058 +
388989-389102,389226-389337,389457-389483,389787-389859,
389958-390061,390144-390358,390429-390528,390739-390805,
391628-391716,391810-391948,392057-392157,392921-393088,
393302-393510
Length = 505
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = -2
Query: 202 VSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKDVSKEKLKTE 23
+ A A V+ P + Q NI + V + + ++ RPS ++ + DV + K K E
Sbjct: 414 IKASSAAVEVTPSPPVLAQNNILMTKDVAEGNATSEN--DRPSAVDNMEVDVGENKAKME 471
Query: 22 ITP 14
+TP
Sbjct: 472 VTP 474
>02_04_0090 -
19643182-19643322,19644192-19644335,19644563-19644626,
19644710-19644796,19645371-19645513,19645706-19645771,
19645954-19646046,19646165-19646230,19646363-19646433,
19646882-19646982,19647217-19647317,19647421-19647528,
19647639-19648064
Length = 536
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = -2
Query: 562 DERTQKFKDPKSP--HKLISFKDALAKKIIDPESVIYNVE 449
++R Q+ P+S KL+S +D +K+I PE ++Y E
Sbjct: 474 EQRAQELALPESSLRRKLLSARDMAQRKVITPEEIVYTTE 513
>04_03_0850 -
20269047-20270595,20270708-20270751,20271248-20271329,
20274027-20274115
Length = 587
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = -2
Query: 229 KVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKD 50
K +P+ + + +A K V+Q N E + K K KVSV +P + IS K
Sbjct: 196 KRMPKPTAVSNTPEAGAIKKLYTSVVVQTNKERDEKNKFGKVSV--LPEKDVISSSVKST 253
Query: 49 VSKEKLKTEITPTEK 5
+K K++ + +P +K
Sbjct: 254 EAKNKVRNK-SPAKK 267
>07_01_0780 +
6047375-6047494,6047603-6047713,6047804-6047926,
6048035-6048168,6048273-6049551
Length = 588
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/95 (27%), Positives = 47/95 (49%)
Frame = -2
Query: 610 KELEMLDLNEAFELLFDERTQKFKDPKSPHKLISFKDALAKKIIDPESVIYNVEAAKPVT 431
K+L L L D+ ++ K+P + +L++F ++K PE + + + +T
Sbjct: 330 KQLMQWHLAVHDSLALDKLSKAVKEPIT--QLLTFASTVSKMHGSPEKFFHMLHMHQALT 387
Query: 430 LQEAVKIGLIDIKTGQLKEPKTGKLVDIKKAAKIG 326
EA + L ++ +G+LKE TG+L I K G
Sbjct: 388 --EAYPV-LQEVFSGELKESFTGELHKILHTLKDG 419
>03_04_0229 - 19018521-19018927,19019132-19019795
Length = 356
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = -2
Query: 190 KATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISE 65
+A+V ++ EP +E EP+V + VS +++P +PS+ E
Sbjct: 10 EASVSRIEEPPV-----LESEPEVSTSLVSTRELPPKPSLVE 46
>08_02_0800 +
21330446-21330722,21331040-21331182,21331925-21331978,
21332065-21332130,21333075-21333096,21333347-21333460,
21334153-21334278,21334891-21334925,21335709-21335809,
21335911-21335971,21336482-21336572,21337657-21337842,
21338755-21338922,21339006-21339208,21339313-21339431,
21339910-21339928,21340092-21340130,21340238-21340465,
21340987-21341088,21341842-21341889,21343622-21343765,
21343873-21343968,21344224-21344325,21345188-21345274
Length = 876
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = -2
Query: 676 AVTSGVLTTEIKPDSSEPSLKKKELEMLDLNEAFELLFDERTQKFKDPKS 527
A+TS + +T +KP S+ + + ELE +LN+ F R + F+D S
Sbjct: 492 ALTSDLPSTVVKPKQSDSLIIQSELEDSELNDEFYDAL-ARGESFEDEDS 540
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -2
Query: 238 KQDKVFEEPSRIVSADKATVDKVTEPKKVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDP 59
++D ++P + + + EP++ QR+ + EPK + ++VS D P R E P
Sbjct: 279 REDSEDDKPKKSRKDRRRHDSEDEEPRRKHQRSEDDEPKRRQSEVSGDDEPRRRR-QEMP 337
Query: 58 KKD 50
K D
Sbjct: 338 KHD 340
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -2
Query: 157 KVIQRNIEVEPKVKDAKVSVKDIPSRPSISEDPKKDVSKEKLKTEITPTE 8
+++ N++ + K+ A S+K I R S K D+ K E+TP E
Sbjct: 10 RLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEE 59
>01_06_0246 +
27845898-27846001,27846235-27846237,27846472-27846700,
27846814-27846968,27847091-27847136,27847233-27847324,
27847425-27847521,27847649-27847705,27847799-27847927
Length = 303
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 365 CFRFF*LSCFDVNKPYFYSFL*SNWFSSLYIVYYR 469
C + L + PYF FL N+F S YI++ R
Sbjct: 95 CLLYLSLIGYKAAVPYFTVFLLINYFMSFYIIFRR 129
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 315 TATSPIFAAFFISTNLPVLGS-FNCPVLMSISPIFT 419
+A+SPIF STN P GS P + SP+F+
Sbjct: 874 SASSPIFCNRLTSTNAPPFGSPATSPFSSTSSPVFS 909
>03_02_0404 -
8165211-8165318,8165397-8165733,8166031-8166242,
8166419-8166526,8166676-8166783,8166884-8166993,
8167122-8167228,8167349-8167566,8167674-8167841,
8168033-8168151,8168438-8168525,8168655-8168849,
8168968-8169271,8169363-8169480,8170034-8170133,
8170283-8170468
Length = 861
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -2
Query: 388 GQLKEPKTGKLVDIKKAAKIGLVAVIAA 305
G +++PK G L D+ KA K+ A+IAA
Sbjct: 331 GMVRQPKWGHLRDVHKAIKLCEPALIAA 358
>02_05_1044 +
33728623-33728768,33728814-33728993,33729446-33729523,
33729834-33729930,33730206-33730339,33730944-33731025,
33731631-33731717,33731875-33731981,33732674-33732845,
33733018-33733259,33733482-33733563,33733954-33734019,
33734040-33734159,33734935-33735012,33735083-33735178,
33735791-33735897,33736031-33736199,33736402-33736452,
33736567-33736650,33736946-33737040,33737175-33737265,
33737342-33737488,33737614-33737676
Length = 857
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +2
Query: 155 FFRLCNLVNSRFISG-HNSTWFLKHLVLLWLHQFTFHR--LSSLYYCHTSEYRSC 310
F + C + N + + +N + + L + L FT +S++ Y H EY+SC
Sbjct: 131 FLQECVINNGTYTNNEYNDVYLVTTLTPIPLEAFTLQESEVSAVRYMHLDEYKSC 185
>01_06_1519 +
37942389-37943702,37944142-37944266,37944358-37944499,
37944602-37944848,37946139-37946196,37947629-37947913,
37947988-37948120
Length = 767
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Frame = -2
Query: 190 KATVDKVTEPKKVIQRNIEVEPKVKDA------KVSVKDIPSRP--SISEDPKKDVSKEK 35
KA V+ E K + E EPK ++ K V + P + +E+PK + S E+
Sbjct: 119 KAKVEAAVEETKAEETKAEEEPKAEEPAKEEEPKAEVAAAAAAPPEAGTEEPKAEASSEE 178
Query: 34 LKTE 23
KTE
Sbjct: 179 AKTE 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,366,186
Number of Sequences: 37544
Number of extensions: 230096
Number of successful extensions: 829
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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