Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1824
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   5.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.6  

>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 463 IYNVEAAKPVTLQEAVKIGLIDIKTGQLKEPKTGK 359
           I+ V   KP T  + +K G+I+ +   LK  +TG+
Sbjct: 132 IHRVLPGKPTTTSDELKRGIINPEDVMLKR-RTGE 165


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 173 LVNSRFISGHNSTWFLKHL 229
           +++S F + HN+T +L H+
Sbjct: 305 IISSVFTTRHNATCYLSHV 323


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 173 LVNSRFISGHNSTWFLKHL 229
           +++S F + HN+T +L H+
Sbjct: 11  IISSVFTTRHNATCYLSHV 29


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -2

Query: 253 KLMQPKQD---KVFEEPSRIVSADKATVDK 173
           +L++P  D     F++ S+IVSA K  +DK
Sbjct: 103 RLLKPYPDWSFAEFKDCSKIVSAFKIAIDK 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,096
Number of Sequences: 438
Number of extensions: 2878
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)