Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1821
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   4.3  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    26   5.7  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   5.7  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    26   5.7  
SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p...    26   5.7  

>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +1

Query: 223 VESWLSSDGVLTV---IAPRT-PAATKNERAVPITQTGPVRKEIKEPTAEAE 366
           +++W  S  +  V   +AP + PA +K     P+T  GP+   I+  T   E
Sbjct: 659 LDNWFVSSVLFDVDGGLAPMSIPAISKRSLTKPVTSCGPLLNNIRRLTVNLE 710


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 862

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
 Frame = +1

Query: 61   LDVQHF-SPEEISVKTADGYVIVEGKH---EERQDEHGYISRQFTRRYALPENCNPDTVE 228
            LDV H+  PE+  + TA    +++G +     R++    I    T +Y        D  E
Sbjct: 762  LDVAHYLDPEDPLISTALAKCLLQGGYGPMHSRRNRADAILSSCTLQYGW------DLPE 815

Query: 229  SWLSSDGVLTVIAPRTPAATKNERAVPITQTGPVRK 336
            +W  +  +   +     AA   +  + +  T PVR+
Sbjct: 816  AWYYTAEIFRQLGDLKQAAFSYDYCIQLADTNPVRR 851


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -2

Query: 298 ARSSWQPESWERSRSAHR 245
           ++  WQP+SW+ SR+ ++
Sbjct: 70  SKEGWQPKSWKSSRNENK 87


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 157 HGYISRQFTRRYALPENCNPDT 222
           HG +S+   +R+ L  NC P T
Sbjct: 269 HGSLSKSIIKRFNLRGNCEPQT 290


>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 208

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 271 RTPAATKNERAVPITQTGPVRKEIKE 348
           R PAA + +  VPITQ    + E+K+
Sbjct: 172 RRPAAMRAQTLVPITQPDSKKNELKQ 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,314
Number of Sequences: 5004
Number of extensions: 39677
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)