Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1820
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    27   3.4  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    26   5.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   7.8  

>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/46 (21%), Positives = 25/46 (54%)
 Frame = +1

Query: 541 SASNGKRIFQIGPVVSEPIRNKQTNKSFLFIILSIDVCVTLQSQCQ 678
           +ASN  ++ ++   +   +R+   +K    +I+ + +C TL  +C+
Sbjct: 39  AASNSSKLRKVAHFLGSRVRHSYYHKRDNEVIIGLKICKTLVQKCR 84


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 439 PPSLRFGNIKTHMKPKK*NNIFLKKSSICSSGTMSASNGK 558
           P  L++G +     P+K  NIF++  S    G +S S  K
Sbjct: 539 PLLLKYGRVLLDKLPEKTTNIFIQFYSNSHRGDLSTSESK 578


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 222 FILENNCNKGGTRYARVVLRKFYLFTHQ 139
           F+L+  CNK G  Y + V+R F     Q
Sbjct: 271 FLLKFLCNKKGLSYFKAVIRAFEWLVEQ 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,553
Number of Sequences: 5004
Number of extensions: 51152
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)