Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1820
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0642 - 19525774-19526554,19526657-19527075                       33   0.29 
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883...    28   8.1  

>10_08_0642 - 19525774-19526554,19526657-19527075
          Length = 399

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -1

Query: 480 FHVCFNVSEAKRGRVASLLYGCVST*TPTIFDRLIVNNEESFRFNSSIEGMASVKQKK 307
           FHV  N+   K    A  + GCVS   P+   + +V+++E +  N+SI      +++K
Sbjct: 280 FHVLRNIMRGKELAAAGPILGCVSR-GPSSLPQGVVSSDEDYFLNNSIASTVFTEKRK 336


>06_03_1457 -
           30287185-30287287,30287691-30287759,30288212-30288351,
           30288447-30288641,30288743-30289363,30289688-30290257,
           30290332-30293638,30293764-30293863,30293978-30295014,
           30295256-30295604,30296299-30296374,30296456-30297022,
           30297094-30297238,30298281-30298405,30298491-30298582,
           30298646-30298828,30298946-30299058,30299499-30299649,
           30299720-30299882
          Length = 2701

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +3

Query: 3   KIWKLRIQSERGQLQRRIKFHMCLISLNVNGR-TGSNYQNLDLVVNIDV*INKISLKLRV 179
           ++ +L IQSE G+LQ      + +I L    R  G+ ++ L+ +  +     K+   + +
Sbjct: 614 QVLELAIQSETGELQNEALMSLPIIVLYSGPRMLGAMFRKLETIGTLG--CKKLWKSIAI 671

Query: 180 RIGFHLCYN 206
            +GF  C N
Sbjct: 672 SLGFLSCLN 680


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,033,979
Number of Sequences: 37544
Number of extensions: 282554
Number of successful extensions: 508
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)