Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1820
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.4  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   8.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.5  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 316 TEENLALNNLLSRSVCFAFKRANCCK 239
           T  N  L NL+S     AFK+  CCK
Sbjct: 321 TTINPILYNLMSIKYRNAFKQTICCK 346


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +1

Query: 307 FLLFYRCHAFNTAIEAEAFFIVHNESIKY---CW 399
           FL+F+ C A + A     F+    + I Y   CW
Sbjct: 457 FLMFFECIAISWAFGVNRFYDGIRDMIGYYPCCW 490


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +1

Query: 307 FLLFYRCHAFNTAIEAEAFFIVHNESIKY---CW 399
           FL+F+ C A + A     F+    + I Y   CW
Sbjct: 510 FLMFFECIAISWAFGVNRFYDGIRDMIGYYPCCW 543


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 319 KTEENLALNNLLSRSVCFAF 260
           K + N+ +NN+L+ S C  F
Sbjct: 272 KRKHNVFVNNILAASACSLF 291


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +1

Query: 439  PPSLRFGNIKTHMKPKK*NNIFLKKSSICSSGTMSASNGK 558
            P +L   + K   KPK   N+ ++    C  G     NGK
Sbjct: 1251 PETLLSYDEKMDQKPKMDFNVDIRYGKNCGKGERIDMNGK 1290


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 328 GICKTEENLALNNLLSRSVCFAFKRANC 245
           G C +  N  +  L S+   FAFK   C
Sbjct: 51  GYCNSAINPCIYALFSKDFRFAFKSIIC 78


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 328 GICKTEENLALNNLLSRSVCFAFKRANC 245
           G C +  N  +  L S+   FAFK   C
Sbjct: 499 GYCNSAINPCIYALFSKDFRFAFKSIIC 526


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,779
Number of Sequences: 438
Number of extensions: 3308
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)