Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1818
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.0  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 589 LLFKRTVPLEGHHVQIILC*TIPVVVSTALKLEVTPAQV 705
           LLF  T+PL      ++ C T  V V + + L   PAQ+
Sbjct: 142 LLFA-TLPLRLSFCVVLACSTATVYVMSVVGLSKAPAQI 179


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 270 AEHAYQKSLENLDLEYVDLYLIHFPGGAKLPAEDK 374
           +EH ++    N+++   D   + FP G K+ +  K
Sbjct: 335 SEHFFEYGGNNIEIIVKDPETLQFPSGMKIISSKK 369


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 273  QHVSHDQTVITL*LQRYPLSQDHIWATKS*MPPP 172
            QH S D T +T  + +Y      IW  +    PP
Sbjct: 929  QHKSQDTTEVTKYILQYKEGDAGIWQQQEFTGPP 962


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -1

Query: 273  QHVSHDQTVITL*LQRYPLSQDHIWATKS*MPPP 172
            QH S D T +T  + +Y      IW  +    PP
Sbjct: 925  QHKSQDTTEVTKYILQYKEGDAGIWQQQEFTGPP 958


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +3

Query: 663 CEHCS*A*GHTCSSFTCVGLC 725
           C H +   G T  +F C G C
Sbjct: 443 CPHFNVTDGETTKTFCCKGYC 463


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 534 WHPYYTQSSLYKFCKQ 581
           W P++TQ  LY + ++
Sbjct: 283 WAPFHTQRLLYVYAQE 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,966
Number of Sequences: 438
Number of extensions: 4408
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)