Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1817
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    36   0.004
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    27   3.3  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    26   4.4  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    26   5.8  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   5.8  

>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 407 YPCPECDKKFASNVYRRQHYNFYHLRKSPYKCEACNK 297
           + CPEC KKF  + + R+H    H  + P+ C  C K
Sbjct: 423 FVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGK 458


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = -2

Query: 673 LNLFINVLAVLARFAGHLKLTLLFIIIIRESNAHINISLSIKYVYFLHGYQVSSQSDARF 494
           L +FI  L VL R +GH      + I+  +S    + + SIK +         S SD  F
Sbjct: 572 LGIFIRTLIVLFRKSGH---GTYYRILDDQSEKATSYNKSIKDM---------SSSDMAF 619

Query: 493 S--RYNGTSVKTTVDL 452
           S   Y+GT+++++VDL
Sbjct: 620 SDPAYSGTTLRSSVDL 635


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -1

Query: 407 YPCP--ECDKKFASNVYRRQHYNFYHLRKSPYKC--EAC 303
           YPC   +C+ +FA+    + H N  H +   Y C  E+C
Sbjct: 144 YPCTYQDCELRFATKQKLQNHVNRAHEKIISYSCPHESC 182


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 407 YPCPECDKKFASNVYRRQHYNFYHLRKSPYKCEAC 303
           +PC +C K+F  +    +H    H +  P  C  C
Sbjct: 31  FPCDQCAKRFTRHENLTRH-KACHSKAEPIPCPYC 64


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 574 HINISLSIKYVYFLHGYQVSSQSDAR 497
           H NI+ ++KYV+   G  +  QSD +
Sbjct: 396 HENINNNVKYVFLAAGSSLKGQSDLK 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,923
Number of Sequences: 5004
Number of extensions: 51367
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)