Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1817
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0965 - 21296608-21297165,21297332-21297682,21297781-212979...    29   2.6  
09_04_0608 + 18924648-18924899,18926341-18926435,18926903-189272...    28   6.0  
01_05_0421 + 21990034-21990392,21991691-21992681                       28   6.0  

>04_03_0965 -
           21296608-21297165,21297332-21297682,21297781-21297965,
           21298076-21298172,21298859-21299071,21299206-21299334,
           21299442-21299567,21301280-21301999
          Length = 792

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 384 LVALRAGIPGLERSRSQ*SILIYKSTVVFTDVPLYLLNRASD*LETWYP-CRKY 542
           L A R  +PG  R R +  +  Y S    + V  Y L  A+    TW P CR++
Sbjct: 155 LAARRRLLPGRRRRRRRRRLACYVSDDGCSPVTYYALREAAGFARTWVPFCRRH 208


>09_04_0608 +
           18924648-18924899,18926341-18926435,18926903-18927236,
           18927345-18927582,18927813-18928069
          Length = 391

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 31/81 (38%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = -3

Query: 582 PTLI*ILAYPLSTCIFYM-DT-KFQVNRMHGSVGITEHP*KPL*IYILV*ITESGFVLIQ 409
           PTLI +L  P STC ++M DT K    R+H    +T    +P    +LV    SG     
Sbjct: 262 PTLIGML--PYSTCYYFMYDTIKTSYCRLHKKTSLT----RP---ELLVIGALSGLTAST 312

Query: 408 VSLPGVRQEVRLKRLQTSALQ 346
           +S P    EV  KRL   ALQ
Sbjct: 313 ISFP---LEVARKRLMVGALQ 330


>01_05_0421 + 21990034-21990392,21991691-21992681
          Length = 449

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -1

Query: 410 RYPCPECDKKFASNVYRRQHYNFYHLRKSPYKCEACNKVSKSNSTFRLFRALVD 249
           ++ C +C KK+A +   + H      R+  YKC+ C  +     +F   RA  D
Sbjct: 82  KWKCDKCSKKYAVHSDWKAHSKICGTRE--YKCD-CGTIFSRRDSFITHRAFCD 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,823,765
Number of Sequences: 37544
Number of extensions: 306934
Number of successful extensions: 612
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)