Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1814
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0602 + 19183549-19184919 32 0.52
01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646 31 1.2
01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078 31 1.2
07_03_1093 + 23912303-23912467,23912671-23912801,23913079-239130... 30 2.1
07_01_0472 - 3571989-3572042,3572126-3572233,3572251-3572478,357... 29 2.8
06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047 29 3.6
06_01_0025 - 244068-244177,244279-244333,244500-244527,244621-24... 29 3.6
02_02_0426 - 10087547-10089054,10090744-10090762 29 3.6
01_01_0039 + 302332-302471,302981-303509,304345-304389,304572-30... 29 4.8
04_03_0997 - 21548158-21548377,21548482-21548523,21548646-215487... 28 6.4
>08_02_0602 + 19183549-19184919
Length = 456
Score = 31.9 bits (69), Expect = 0.52
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +3
Query: 297 ATNYIAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEE---YAHPKYDFAYSVADG 467
A+ +AAA P A + A V + +L+SA HE YA+ + D A ADG
Sbjct: 198 ASGSVAAALP---AGVLDDACADLDVTSSNQPLLLSAEHEVVDALYANQEADAAILHADG 254
Query: 468 HSGDNKSQHESRDG 509
H ++SQ E G
Sbjct: 255 HHNQDESQREHHHG 268
>01_06_0666 + 31040768-31041079,31041716-31041889,31041996-31042646
Length = 378
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +3
Query: 261 SSQTILRHDQPHATNYIAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPK 437
SS+ +RH + H+++ + A P+ A P+ ++P++ P + S HHE + H K
Sbjct: 209 SSRIAIRHSRDHSSDCLTPA-PMPPA-PLSCSSPISIKQPPRLSIQRSQHHERDTRHAK 265
>01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078
Length = 455
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -2
Query: 583 SSAVYSTLRTEPSASTRVYSPCTASPSRDSCWDL 482
+S+V R++PS+ + + SPC ASP RD+ ++L
Sbjct: 389 ASSVGPLFRSQPSSDS-LQSPCKASPCRDASFEL 421
>07_03_1093 +
23912303-23912467,23912671-23912801,23913079-23913087,
23913146-23913228,23914494-23914596,23915988-23916066,
23916174-23916274,23916371-23916479
Length = 259
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 471 SGDNKSQHESRDGDAVHGEYTLVEADGSVRKVEYTADDHHGFNAVVSNTG 620
S DN + + G Y LV D +V VEY+ G+N VV+ G
Sbjct: 92 SADNTVRRSLMLAFSSGGNYFLVRHDAAVSCVEYSYSTVSGYNLVVATAG 141
>07_01_0472 -
3571989-3572042,3572126-3572233,3572251-3572478,
3573007-3573111,3573310-3573399,3573765-3574256
Length = 358
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = -1
Query: 632 VVSGAGVADDSVEAMVVISGVLNLA 558
V SGAG DD+ VVI+GVL+LA
Sbjct: 56 VASGAGGRDDAAGDEVVIAGVLSLA 80
>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
Length = 396
Score = 29.1 bits (62), Expect = 3.6
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Frame = +3
Query: 282 HDQPHATNYIAAAAPVHYASPVHYAAPVAKVIAPAHKVL---VSAHHEEEYAH-PKYDFA 449
H + + ++AAAA YASP A A A +V+ + + H D +
Sbjct: 188 HHRKPSPPFVAAAAAAAYASPDQMECTSAAAAAAAKRVVREDCKPKVSKRFVHADPSDLS 247
Query: 450 YSVADGHSGDNKSQHESRDGDAVHGEY--TLVEADGSVRKVEYTADDH 587
V DG+ Q ++D + + A +KV+ +ADD+
Sbjct: 248 LVVKDGYQWRKYGQKVTKDNPCPRAYFRCSFAPACPVKKKVQRSADDN 295
>06_01_0025 -
244068-244177,244279-244333,244500-244527,244621-244691,
244829-244926,245069-245186,245573-245636,245744-245808,
245893-245928,246255-246311,246422-246691
Length = 323
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +3
Query: 309 IAAAAPVHYASPVHYAAPVAKVIAPAHKVLVSAHHEEEYAHPKYDFAYSVADG 467
+AAA P YA + AAP A + P S EY H Y F + G
Sbjct: 43 LAAAHPYGYAPWLANAAPAALLRRPVSTTFYSFDLLREYPHDPYAFTQGLLYG 95
>02_02_0426 - 10087547-10089054,10090744-10090762
Length = 508
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = -2
Query: 595 KPWWSSAVYSTLRTEPSASTRVYSPCTASPSRDSC 491
+PWW + + P A PC SPS C
Sbjct: 437 RPWWEKEAATAVPDPPCARVATPEPCFHSPSYYEC 471
>01_01_0039 +
302332-302471,302981-303509,304345-304389,304572-304718,
304834-304899,304993-305058,305171-305257
Length = 359
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 53 CCRSPARGALLFGSSCLLSEHRPSRPATAPCHQI 154
CC+ A A + G S + EH P A P H I
Sbjct: 182 CCKRQAAAAAVVGHSSIRDEHVPCPYAGPPAHLI 215
>04_03_0997 -
21548158-21548377,21548482-21548523,21548646-21548722,
21548798-21548914,21549149-21549252,21549330-21549399,
21549489-21549598,21549845-21549932,21550006-21550096,
21550176-21550268,21550362-21550687,21550922-21551290,
21551934-21552020
Length = 597
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 559 RTEPSASTRVYSPCTASPSRDSCWDLLSPLC 467
RT P A + +P +P++D W PLC
Sbjct: 8 RTNPGAGNQTTTPWKKTPAKDRDWRWRIPLC 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,139,702
Number of Sequences: 37544
Number of extensions: 219546
Number of successful extensions: 872
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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