Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1813
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.58 
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    27   2.3  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    25   9.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.4  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 499 RFHRIDRCDYASVRIPETGVPNFXMKCTLNTILAS 603
           + H++  C Y S+RIP   +P   ++  +NT+ A+
Sbjct: 849 KLHQVT-CSYISIRIPHKFIPFILIESAINTVKAA 882


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 577 ISXKNWVPLSPGFEHWHSRIGRCDETARIIP*TTSLLSCL 458
           +S  NW+ +S  F+H +    +C E  R  P     LS L
Sbjct: 194 MSSNNWIVVSNEFDHLNKVSQKCKEAGRNPPPYIEFLSAL 233


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 23/68 (33%), Positives = 34/68 (50%)
 Frame = -1

Query: 424 TSSAVTIPAMSS*IIACPFQHVKSGHHLTLYISSN*KKTANNISNSITKPAILEIGLIRT 245
           TSSA +  A S   IA    +VKSG+    ++SSN K   + +    ++P+IL   L+  
Sbjct: 5   TSSAQSSGAAS---IARSSVNVKSGNR---HLSSNKKSATSALEERASRPSILVTFLVLA 58

Query: 244 PTYARLRI 221
            T   L I
Sbjct: 59  GTILSLYI 66


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
 Frame = -1

Query: 502 TARIIP*TTSLLSCLMKIVVLIRAVLTSSAVTIPAMSS*I--IACPFQHV-KSGHHLTLY 332
           ++ +IP +++L+S    ++V    V +SS+  IP+ SS +   +    ++  S   LT  
Sbjct: 667 SSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAM 726

Query: 331 ISSN*KKTANNISNSIT 281
            SS+   T+ N S  IT
Sbjct: 727 SSSSAIPTSVNSSTLIT 743


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,236
Number of Sequences: 5004
Number of extensions: 50541
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)