Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1813
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032639-4|CAA21636.2|  858|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z49966-5|CAA90245.1|  445|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF101319-5|AAC69356.2|  530|Caenorhabditis elegans Hypothetical ...    28   5.0  

>AL032639-4|CAA21636.2|  858|Caenorhabditis elegans Hypothetical
           protein Y38F1A.3 protein.
          Length = 858

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = -1

Query: 568 KNWVPLSPGFEHWHSRIGR-----CDETARIIP*TTSLLSCLMKIVVLIRAVLTSSAVTI 404
           +NW  ++  ++H +  I        D+   I+P T S + C +  +++I  + T S VTI
Sbjct: 612 ENWREMASEYQHLNLTIYEDFSMYSDQLLTIVPVTQSTVFCALICMIMILTLFTPSPVTI 671

Query: 403 PAMSS*IIA 377
              ++ +++
Sbjct: 672 VTSTAAVLS 680


>Z49966-5|CAA90245.1|  445|Caenorhabditis elegans Hypothetical
           protein F35C11.5 protein.
          Length = 445

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 38  HKCFTS-FSPNALNILIIFYANEFKCILIHYVNLFLYYNKKSSVFLDTNYQLFN 196
           H  F S + PN     I    N F  +L+++V  FL+Y K+  +F   N    N
Sbjct: 33  HSIFLSAYKPNKFISSIFVCCNSF--LLLNFVESFLFYKKEIRLFFLNNLSTKN 84


>AF101319-5|AAC69356.2|  530|Caenorhabditis elegans Hypothetical
           protein K08D9.6 protein.
          Length = 530

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = +1

Query: 223 YVTSRMLEFELNRFRE*RVSLLNLKCYLLFFFNYLIYIMSSDDPISHAEKGTQ*FKSSSR 402
           Y   R+L      FR  ++ +L L   +LFF   ++YI    +P S A+     F   + 
Sbjct: 15  YRQYRILNATNGVFRRGKIHILTLIISILFFL--ILYIFGIPEPSSIAQVVKDSFSPPAL 72

Query: 403 EWSQHWMLVQRVLI 444
             S+H + V  V I
Sbjct: 73  PVSEHLLPVSHVFI 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,698,338
Number of Sequences: 27780
Number of extensions: 272823
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)