Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1813
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    25   0.83 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.83 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.83 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.9  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 107 KCILIHYVNLFLYYNKKSSVFLDTNYQLFNRIQ 205
           K I  HY+  + + +  SS+ LD  + +FN+ Q
Sbjct: 158 KLIAKHYLRTWFFLDLISSIPLDYIFLIFNQFQ 190


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 107 KCILIHYVNLFLYYNKKSSVFLDTNYQLFNRIQ 205
           K I  HY+  + + +  SS+ LD  + +FN+ Q
Sbjct: 158 KLIAKHYLRTWFFLDLISSIPLDYIFLIFNQFQ 190


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 107 KCILIHYVNLFLYYNKKSSVFLDTNYQLFNRIQ 205
           K I  HY+  + + +  SS+ LD  + +FN+ Q
Sbjct: 158 KLIAKHYLRTWFFLDLISSIPLDYIFLIFNQFQ 190


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 6    NYLKTERSAFRINASLH 56
            N+L TE S F   A+LH
Sbjct: 1134 NFLLTEWSRFEFRAALH 1150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,568
Number of Sequences: 438
Number of extensions: 3208
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)