Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1811
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac... 28 1.3
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 27 1.7
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 27 2.3
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p... 27 2.3
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 26 3.9
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch... 26 3.9
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 26 5.2
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 26 5.2
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 25 6.9
>SPBC8D2.19 |mde3||serine/threonine protein kinase
Mde3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 559
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 346 CSQQHKKQKDGLRADFI---SNIDVKTWHDRVSKNPESLWNLCEDYKCYPDIWSLH 504
CSQ + K+G+ + + S +++ + + + NP + N+C D+ + SLH
Sbjct: 500 CSQPDESNKEGVASCLLLQKSGMEMTSVLEYSTPNPAEVQNICNDHAKFETSKSLH 555
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +1
Query: 172 DRWLQLFSL---FGYTNTDLESLHHANGPITPILQKNPIRRHISLRITAIRETFEELGIL 342
D WL L L G NT E+ A + +++KN RR++ + + FEE+ +
Sbjct: 320 DTWLDLLKLEESAGDINTIRETYEKAIAKVPEVVEKNAWRRYVYIWLNYC--LFEEIDVK 377
Query: 343 LCSQQHKKQKDGLR 384
+ K ++ L+
Sbjct: 378 DVDRARKVYQEALK 391
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 27.1 bits (57), Expect = 2.3
Identities = 25/87 (28%), Positives = 35/87 (40%)
Frame = +1
Query: 37 TKRSKQSLSRGGVNYEILLQTLTGRGAFPNSVVFPGGVTEDADEDDRWLQLFSLFGYTNT 216
T SK S S G V + L + +G A V P T++ D Q +L
Sbjct: 42 TFSSKSSHSDGTVTGDTLRRQSSGATALERLVSHPR--TKNFDLQGNGGQNSALKEVNTP 99
Query: 217 DLESLHHANGPITPILQKNPIRRHISL 297
+S+HH ITP+ N +SL
Sbjct: 100 AYQSMHHFEHLITPLPSTNASHSEVSL 126
>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 464 VKIISAIQTYGHYITGAI 517
+ I+SA Q+YG +ITG I
Sbjct: 196 IDIVSAFQSYGEFITGKI 213
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 26.2 bits (55), Expect = 3.9
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -2
Query: 443 GFLLTLSCQVLTSILDMKSALKPSFCFLCC*LHSRIPNSSKVSLMAVILN 294
GFL TLSC V+ + + +S L + SRIPN KV LM+ +N
Sbjct: 692 GFLSTLSCVVVDEVHE-RSIENDILLTLLKLVISRIPN-LKVILMSATVN 739
>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 484 PDIWSLHYWSNWLTP 528
PDI +LHYW+ L+P
Sbjct: 214 PDIKNLHYWTTRLSP 228
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Frame = -1
Query: 132 HAVWKRTATRQSLQQNFVINT------PARQRLLTTLREHYQRS 19
H +WKR S Q+++ + P L +T+RE YQ++
Sbjct: 38 HDIWKRIQAADSQIQSYIKSHGSLTPHPKEDALYSTIREEYQKA 81
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/75 (21%), Positives = 33/75 (44%)
Frame = +1
Query: 268 KNPIRRHISLRITAIRETFEELGILLCSQQHKKQKDGLRADFISNIDVKTWHDRVSKNPE 447
K I + + ++R+ EL ++C +++ K ++ ++D T D +SK
Sbjct: 360 KELILSSLRYKDVSLRKKSLELLYMMCDEENAKLIVADLLQYLPHLDSVTQEDLISKVAI 419
Query: 448 SLWNLCEDYKCYPDI 492
DY+ Y D+
Sbjct: 420 ISETFATDYEWYVDV 434
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 25.4 bits (53), Expect = 6.9
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 424 DRVSKNPESLWNLCEDYKCYPDIWSLHYWSNWLTPATLPKRFNTAFFVTAL 576
D SK + + N D+ Y + S+H WL T + N FV AL
Sbjct: 42 DMKSKRNKEVKNQMNDWLAYGYLCSVHEAKKWLEEETNNEYQNLDDFVDAL 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,223
Number of Sequences: 5004
Number of extensions: 52737
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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