Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1811
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0401 - 5260308-5260361,5260457-5260507,5260764-5260809,526... 33 0.25
08_02_0420 - 16911814-16912851 31 0.76
08_01_0576 - 5114636-5115151,5115254-5116183,5116898-5117614,511... 31 1.0
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 31 1.0
10_08_0662 + 19662748-19662826,19662868-19663136,19664360-196645... 28 5.4
09_04_0606 + 18909065-18909218,18909674-18909737,18910895-189110... 28 5.4
03_02_0173 + 6138406-6138628,6139769-6139857,6139922-6140608,614... 28 5.4
01_01_0676 + 5194718-5194940,5195420-5195952 28 7.1
08_02_1579 + 27997714-27998199,27998718-27998789,27999073-279991... 27 9.4
05_03_0625 - 16325827-16326495 27 9.4
02_01_0481 + 3459443-3460303 27 9.4
>04_01_0401 -
5260308-5260361,5260457-5260507,5260764-5260809,
5260884-5260933,5261019-5261062,5261231-5261310,
5261391-5261461,5261636-5261725,5262367-5262498,
5263420-5263470,5263615-5263704,5263841-5263878,
5265882-5266002,5267653-5267960,5268742-5268820,
5270019-5270113,5270288-5270428,5270792-5270831
Length = 526
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 241 NGPITPILQKNPIRRHISLRITAIRETFEELGILLCSQQHKKQKDGLRADF 393
N +T L NP RH+ I + ETF+ G+++ + +K + + L A F
Sbjct: 231 NWILTEKLHINPRDRHLYSAILVLGETFDNRGLMILMRNYKLRPEALAAAF 281
>08_02_0420 - 16911814-16912851
Length = 345
Score = 31.1 bits (67), Expect = 0.76
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 85 ILLQTLTGRGAF-PNSVVFPGGVTEDADEDDRWLQLFSL 198
+LL+ LTGR AF P G +D D+DDR L F L
Sbjct: 244 VLLELLTGRKAFCPPPDSAAGSQDDDDDDDDRSLAFFFL 282
>08_01_0576 -
5114636-5115151,5115254-5116183,5116898-5117614,
5119630-5119746,5119930-5120295,5121365-5121634
Length = 971
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -1
Query: 165 VSVFGNSAGEHHAVWKRTATRQSLQQNFVINTPARQRLLTTLREHYQRSGVTPT 4
+ +GNS G+ V +R Q L N + P+ Q+ LT+ E Y ++PT
Sbjct: 376 IDAYGNSQGKD--VDERLPKMQRLDSNGMAGRPSAQKWLTSEEEEYTWEDMSPT 427
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 7 WRDAATLIVLTKRSKQSLSRGGVNYEILLQTLTG-RGAFPNSVVFPGGVTEDADEDDR 177
W +A KR Q++S+G NYE++LQ G R + S P AD D +
Sbjct: 306 WAPSAAATPEGKRPGQTISKGHKNYELMLQLQLGIRHSVGKSAAVPMRELSPADFDPK 363
>10_08_0662 +
19662748-19662826,19662868-19663136,19664360-19664571,
19665356-19665623,19665709-19666002
Length = 373
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 493 WSLHYWSN--WLTPATLPKRFNTAFFVTALEEKPELKNYST 609
W LH+W N WL +T+ + F AL+EK L ST
Sbjct: 233 WLLHWWMNQTWLPTSTVIS--GSGSFPNALDEKNRLMALST 271
>09_04_0606 +
18909065-18909218,18909674-18909737,18910895-18911023,
18913680-18913830,18914369-18914491,18915638-18915711,
18916048-18916591,18916948-18917085,18917159-18917203
Length = 473
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 463 CEDYKCYPDIWSLHYWSNWLTPATLPKRFNTAFF 564
C+D++C P +W L L P+ LP F+ A F
Sbjct: 324 CKDWRCVPLLWYLIMVQ--LEPSELPMAFSKAVF 355
>03_02_0173 +
6138406-6138628,6139769-6139857,6139922-6140608,
6140682-6140834,6140922-6141290
Length = 506
Score = 28.3 bits (60), Expect = 5.4
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +1
Query: 220 LESLHHANGPITPILQKNPIRRHISLRITAIRETFEELGILLCSQQHKKQKDGLR-ADFI 396
++SLH ++ P ++ +R SL + +R T ELGILL S +K G++ D I
Sbjct: 187 IQSLHLSHCSFRPTVEVVSLRSLTSLDLCLVRITDRELGILL-SNSLVLEKLGIKYCDKI 245
Query: 397 SNIDVKTWHDRVS 435
+ + + +R+S
Sbjct: 246 NCLKIPCVLERLS 258
>01_01_0676 + 5194718-5194940,5195420-5195952
Length = 251
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 157 DADEDDRWLQLF-SLFGYTNTDLESLHHANGPITPILQKNPIRRHIS 294
DA D + LQ F + Y +++L GP+ IL+KN +++ ++
Sbjct: 35 DAMNDKKELQQFLGIVNYARNHIQNLAKLAGPLYAILRKNGMKKSMN 81
>08_02_1579 +
27997714-27998199,27998718-27998789,27999073-27999120,
27999203-27999357,27999477-27999671,27999743-27999854,
27999955-28000024,28000110-28000168,28000251-28000374,
28000465-28000535,28001053-28001154,28001242-28001322,
28001504-28001662,28001757-28001807
Length = 594
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 383 GRISYLILMLKLGMTE*ARIQKAFGTCVKIISAIQTYGHYITGAI 517
GR++ +M+ G + Q G I+SA Q YG ++TG+I
Sbjct: 171 GRLNRPSIMIYGGTIKPGHFQ---GNSYDIVSAFQCYGEFVTGSI 212
>05_03_0625 - 16325827-16326495
Length = 222
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 73 VNYEILLQTLTGRGAFPNSVVFPGGVTEDADED 171
V + + Q GRG + V PG V E DED
Sbjct: 174 VAHTLCRQAYQGRGLWTERVPMPGAVREKIDED 206
>02_01_0481 + 3459443-3460303
Length = 286
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 123 WKRTATRQSLQQNFVINTPARQRLLTTLRE 34
WKRT RQ ++ + N ARQ + RE
Sbjct: 18 WKRTRGRQRIEMKLIENKEARQVCFSKRRE 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,344,469
Number of Sequences: 37544
Number of extensions: 332073
Number of successful extensions: 809
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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