Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1811
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80437-7|AAB37622.2|  295|Caenorhabditis elegans Nudix family pr...    46   2e-09
Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical pr...    31   0.69 
AF003139-3|ABJ99066.1|  152|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z68270-2|CAA92567.1|  532|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U80023-7|AAG24034.1|  145|Caenorhabditis elegans C-type lectin p...    29   3.7  
Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical p...    28   6.4  
Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical p...    28   6.4  
Z81074-2|CAB03038.2|  671|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z50742-1|CAA90614.2|  605|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U80437-7|AAB37622.2|  295|Caenorhabditis elegans Nudix family
           protein 7 protein.
          Length = 295

 Score = 46.4 bits (105), Expect(2) = 2e-09
 Identities = 33/124 (26%), Positives = 59/124 (47%)
 Frame = +1

Query: 259 ILQKNPIRRHISLRITAIRETFEELGILLCSQQHKKQKDGLRADFISNIDVKTWHDRVSK 438
           ++ K   +     RI A+RE FEE G+L  S ++  Q      D  S +     +D  SK
Sbjct: 48  VVDKTDAKLGDEFRIAAVRELFEESGVL--STKNGWQTSANNPDMTS-LKADIVND-TSK 103

Query: 439 NPESLWNLCEDYKCYPDIWSLHYWSNWLTPATLPKRFNTAFFVTALEEKPELKNYSTEVA 618
             +    +C D        +L  W  ++TPA  P+RF T F++  ++++P +   ++E++
Sbjct: 104 FEQLSGTICAD--------NLIEWDTFITPANYPRRFLTKFYLMLVDDEPAIDLCTSEMS 155

Query: 619 FVKW 630
              W
Sbjct: 156 EYNW 159



 Score = 33.1 bits (72), Expect(2) = 2e-09
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +1

Query: 4   SWRDAATLIVLTKRSKQSLSRGGVNYEILLQTLTGRGAFPNSVVFPGGVTEDAD 165
           SWR AA++I+  K +++ L         +L+  T     PN++VFPGGV +  D
Sbjct: 9   SWRSAASIILACKTTRRVL---------MLKRGTTAKFMPNTMVFPGGVVDKTD 53


>Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical
           protein F47A4.5 protein.
          Length = 1071

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
 Frame = +1

Query: 130 VVFPGGVTEDADEDDRWLQLFSLFGYTNT-DLESLHHANGPITPILQKNPIRRHISLRIT 306
           V  P G +ED   D+R    FSLF  T+  DL  L H     + +     +    ++R  
Sbjct: 298 VFAPVGFSEDVSLDER---PFSLFRATDKKDLMDLLHLCDEKSFLFTSLDMS---TMRAD 351

Query: 307 AIRETFEELGILLCSQQHKKQKDGL----RADFISNIDVKTWHDRVSKNPESLWNLCEDY 474
            +R   EEL I +  + H           R DF S+  +KT ++ +      L  LC   
Sbjct: 352 ILRSKIEELVIQIRLKPHYHMIHVAIATDRLDFFSDGMIKTMNETLEPFESQLRCLCHTE 411

Query: 475 KCYP 486
            CYP
Sbjct: 412 NCYP 415


>AF003139-3|ABJ99066.1|  152|Caenorhabditis elegans Hypothetical
           protein F53G12.9 protein.
          Length = 152

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 403 IDVKTWHDRVSKNPESLWNLCEDYKCYPD--IWSLHYWSNWLTP 528
           +D  TW    S+  +  W L +D K   D  +  L++W NW+ P
Sbjct: 102 LDELTWMLAYSRGQDFTW-LRDDRKIIEDFGLVQLYFWRNWIVP 144


>Z68270-2|CAA92567.1|  532|Caenorhabditis elegans Hypothetical
           protein ZC410.3 protein.
          Length = 532

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +1

Query: 355 QHKKQKDGLRADFISNIDVKTWHDRVSKNPESLWNLCE 468
           Q KK  D LR DFI +I     H      P S+W L E
Sbjct: 307 QTKKSIDWLRDDFIQSIAAMKKHLYRQSQPNSIWFLGE 344


>U80023-7|AAG24034.1|  145|Caenorhabditis elegans C-type lectin
           protein 46 protein.
          Length = 145

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 407 MLKLGMTE*ARIQKAFGTCVKIISAIQTYGHYITGAIG 520
           +L LGMT  ++    +GTCV + +  QT G +++   G
Sbjct: 97  VLALGMTGASQPNNRYGTCVFVGNRSQTAGQWVSAECG 134


>Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical
           protein R74.1 protein.
          Length = 1186

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 100 LTGRGAFPNSVVFPGGVTEDADEDDRWLQLF 192
           L  +GAF  SVV P G+  D   D  W  +F
Sbjct: 610 LLQQGAFDGSVVGPAGIKADQMTDASWSYVF 640


>Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical
           protein R74.1 protein.
          Length = 1186

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 100 LTGRGAFPNSVVFPGGVTEDADEDDRWLQLF 192
           L  +GAF  SVV P G+  D   D  W  +F
Sbjct: 610 LLQQGAFDGSVVGPAGIKADQMTDASWSYVF 640


>Z81074-2|CAB03038.2|  671|Caenorhabditis elegans Hypothetical
           protein F32B6.2 protein.
          Length = 671

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 180 PAIVFVSVFGNSAGEHHAVWKRTATRQSLQQNFVINTPA 64
           P  V V VFG+  G +  +W+R  + Q   Q  +   PA
Sbjct: 223 PRHVEVQVFGDHHGNYVHLWERDCSVQRRHQKIIEEAPA 261


>Z50742-1|CAA90614.2|  605|Caenorhabditis elegans Hypothetical
           protein K09A11.1 protein.
          Length = 605

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 4/104 (3%)
 Frame = +1

Query: 319 TFEELGILLCSQQHKKQKDGLRADFISNIDVKTWHDRVSKNPESLWNLCEDY--KCYPDI 492
           TFEE+   LC    K QK    A     I  +  H+ ++    ++      Y      D+
Sbjct: 462 TFEEISSELCGPAPKSQKLDFDAYIQEKIKSRGKHNALTGEKLTVRMEVTRYLSTAVEDV 521

Query: 493 WSLHYWSNWLTPATLPK--RFNTAFFVTALEEKPELKNYSTEVA 618
               +W N +T A+ P+  +F   F +         K +ST+ A
Sbjct: 522 TPRDFWLNDVTKASYPRLAKFARRFIICPTGSSAAEKLFSTDRA 565


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,122,928
Number of Sequences: 27780
Number of extensions: 294522
Number of successful extensions: 755
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)