Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1810
         (466 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   4.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.4  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    20   9.8  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    20   9.8  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 61  RNKSFFLCEKITKHKV 108
           RN+   LCEK+ K  +
Sbjct: 257 RNEIILLCEKVAKEDI 272


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 282 QFRDRRIFVGIAWG 241
           +FR  +I+V + WG
Sbjct: 242 RFRMEKIYVALVWG 255


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 49  IVNIRNKSFFLCEKITKHKVV 111
           I+NI  K+F LC+K    K V
Sbjct: 26  ILNIALKNFRLCKKHKTKKPV 46


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 49  IVNIRNKSFFLCEKITKHKVV 111
           I+NI  K+F LC+K    K V
Sbjct: 26  ILNIALKNFRLCKKHKTKKPV 46


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,220
Number of Sequences: 336
Number of extensions: 1950
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10721526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)