Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1810
         (466 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    27   1.9  
SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.7  
SPAC20G8.07c |erg2||C-8 sterol isomerase Erg2 |Schizosaccharomyc...    25   7.5  
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    25   7.5  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    24   9.9  

>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 230 VRDLPHAIPTKILLSRNCYDCNRQPYTKNVYVVIKNESL 346
           + D+   IP ++LL     D  R   T NVY VIK   L
Sbjct: 78  ISDIKFNIPKEMLLPDGTPDYLRLTLTSNVYEVIKETPL 116


>SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +3

Query: 159 HTILNYDINVSCATQILPTYRNCV*ETYPTQSPR 260
           H  L YD+ + C   +   +R C+       SP+
Sbjct: 4   HYFLQYDVQILCIALMFSIFRVCISTAIDFTSPK 37


>SPAC20G8.07c |erg2||C-8 sterol isomerase Erg2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 219

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 145 KIIATFVPIFLKLLYV*LFFHTEKNFCFEYSRLSEL 38
           K +  F+P    L+Y    +H    + F+ ++L EL
Sbjct: 5   KFLTVFIPFIAGLIYYIQKYHLRSFYQFDPAKLQEL 40


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 386 KNSYISLISVT*QTVIRSL-*RHIHF*CTVAYCNRSSSVIEEFS 258
           KN Y+S +SVT QT+  +L  +H+     + Y       I++FS
Sbjct: 72  KNLYLSQLSVTNQTLFYALISQHLIEMIPIIYTPTEGDAIKQFS 115


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +1

Query: 163 LY*IMISMSHALPKYYL 213
           L+ +++SM+H + KYYL
Sbjct: 862 LHLLLVSMNHLIKKYYL 878


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,751,288
Number of Sequences: 5004
Number of extensions: 32031
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)