Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1810
         (466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067937-1|AAF99912.1|  533|Caenorhabditis elegans Hypothetical ...    29   1.6  
U80027-1|AAC48122.2|  338|Caenorhabditis elegans Serpentine rece...    29   2.2  
Z77668-3|CAI46576.1|  284|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z77655-9|CAI46567.1|  284|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z81130-8|CAB03416.1|  347|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AY455927-3|AAR26304.1|  347|Caenorhabditis elegans phosphoglucos...    27   5.0  
AF067937-3|AAF99913.2|  559|Caenorhabditis elegans Hypothetical ...    27   8.8  

>AF067937-1|AAF99912.1|  533|Caenorhabditis elegans Hypothetical
           protein F22F7.4 protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +1

Query: 214 PTVTVCERPTPRNPHENSSITELLRLQ*ATVH*KCICRYKERITVCYVTDINDI 375
           P +T+ + PT   P+   +    LR Q A  H  CI  YKE ++   V D++DI
Sbjct: 226 PWLTI-KFPTTDGPYLEPNRNVELRNQ-AAAHTDCILMYKEAVSFIGVIDMDDI 277


>U80027-1|AAC48122.2|  338|Caenorhabditis elegans Serpentine
           receptor, class j protein11 protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 204 ILPTYRNCV*ETYPTQSPRKFFYHGTATI 290
           +LP YRN +  T   + P K+FY GT+T+
Sbjct: 301 LLPNYRNKLFRT--VKMPIKYFYSGTSTV 327


>Z77668-3|CAI46576.1|  284|Caenorhabditis elegans Hypothetical
           protein R11G10.3 protein.
          Length = 284

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -1

Query: 166 IVCSVAIKIIATFVPIFLKLLYV*LFFHTEKNFCFEYSRLSELVMYISKNSYSII 2
           +V S+ I+    F P+F+   ++ L  HT  NF   +  L E   +I++  +SI+
Sbjct: 36  VVASLFIRHPNVFHPLFVISFFLVLLAHTTSNFILFFRNLLEF-FFINQLLFSIL 89


>Z77655-9|CAI46567.1|  284|Caenorhabditis elegans Hypothetical
           protein R11G10.3 protein.
          Length = 284

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -1

Query: 166 IVCSVAIKIIATFVPIFLKLLYV*LFFHTEKNFCFEYSRLSELVMYISKNSYSII 2
           +V S+ I+    F P+F+   ++ L  HT  NF   +  L E   +I++  +SI+
Sbjct: 36  VVASLFIRHPNVFHPLFVISFFLVLLAHTTSNFILFFRNLLEF-FFINQLLFSIL 89


>Z81130-8|CAB03416.1|  347|Caenorhabditis elegans Hypothetical
           protein T23G11.2 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 114 RKIGTKVAIILIATEHTILNYDINVSCATQILPTY 218
           +K+G  +  +L+    TI  Y +++ C T+++P Y
Sbjct: 112 KKLGALLNEVLVEMAKTIGVYKLSLECKTELIPFY 146


>AY455927-3|AAR26304.1|  347|Caenorhabditis elegans
           phosphoglucosamine acetyltransferaseprotein.
          Length = 347

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 114 RKIGTKVAIILIATEHTILNYDINVSCATQILPTY 218
           +K+G  +  +L+    TI  Y +++ C T+++P Y
Sbjct: 112 KKLGALLNEVLVEMAKTIGVYKLSLECKTELIPFY 146


>AF067937-3|AAF99913.2|  559|Caenorhabditis elegans Hypothetical
           protein F22F7.3 protein.
          Length = 559

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +1

Query: 214 PTVTVCERPTPRNPHENSSITELLRLQ*ATVH*KCICRYKERITVCYVTDINDI 375
           P +T+ + P    P+   +    LR Q A  H  CI  YKE ++   + D++DI
Sbjct: 235 PWLTI-KFPVTDGPYLEPNRNVELRNQ-AAAHTDCILMYKEAVSFVGILDMDDI 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,604,701
Number of Sequences: 27780
Number of extensions: 178751
Number of successful extensions: 400
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)