Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1806
         (751 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9G892 Cluster: Ribosomal protein S14; n=1; Malawimonas...    36   1.4  
UniRef50_A7RXG3 Cluster: Predicted protein; n=1; Nematostella ve...    36   1.4  
UniRef50_UPI0000D57700 Cluster: PREDICTED: similar to CG12263-PA...    34   3.3  
UniRef50_A5K562 Cluster: Putative uncharacterized protein; n=1; ...    34   4.3  
UniRef50_A0LYL1 Cluster: Membrane protein; n=1; Gramella forseti...    33   7.5  
UniRef50_Q4GYB6 Cluster: Putative uncharacterized protein; n=2; ...    33   7.5  
UniRef50_Q4GYC1 Cluster: Putative uncharacterized protein; n=1; ...    33   9.9  

>UniRef50_Q9G892 Cluster: Ribosomal protein S14; n=1; Malawimonas
           jakobiformis|Rep: Ribosomal protein S14 - Malawimonas
           jakobiformis
          Length = 99

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 15/39 (38%), Positives = 27/39 (69%)
 Frame = -1

Query: 217 KYIVFSISMKRFLFSNAMTIKKNVPKNSSSI*NFNGCLV 101
           KYI+++ S+ + + +NAM +   +PKNSS+I   N C++
Sbjct: 26  KYIIYNDSISKEVRTNAMILLNKLPKNSSNIRIHNRCVI 64


>UniRef50_A7RXG3 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 492

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = -1

Query: 355 YCVSVVLYHFIFYIFLSNY*FHFSYNVEYPFSVLTKYLLFSY**L*KYIVFSISMKRFLF 176
           Y  S++ +H+IF I   +Y F    +  Y FS++T + +FS      + +FSI    ++F
Sbjct: 85  YIFSIITHHYIFSIITHHYFFSIITH-HYIFSIITHHYIFSI--FPHHYIFSIFTHHYIF 141

Query: 175 S 173
           S
Sbjct: 142 S 142


>UniRef50_UPI0000D57700 Cluster: PREDICTED: similar to CG12263-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG12263-PA - Tribolium castaneum
          Length = 1299

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 406 IFFQS*KTCGKTILHVLYCVSVVLYHFIFYIFLSN 302
           IF  S  TC   +L V  CVS+VLYHF +   L++
Sbjct: 489 IFMSSFLTCSYFVLLVAVCVSIVLYHFSYVSSLTS 523


>UniRef50_A5K562 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium vivax|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 2287

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +1

Query: 301  NCLKIYKK*NDTKLH*HNTIHARLFYRMFFNFEKI*KI--LKTGAYFKYVKLYWLSRFSI 474
            NCL   +K   TK+H     H  + YR  F F+KI  I  ++   + KY K Y +S+ +I
Sbjct: 1293 NCLNRQEKSTLTKIHNKLENHLNIHYRKIFIFKKILDIYLIELNNFKKYQKDYTISKINI 1352


>UniRef50_A0LYL1 Cluster: Membrane protein; n=1; Gramella forsetii
           KT0803|Rep: Membrane protein - Gramella forsetii (strain
           KT0803)
          Length = 228

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 24/98 (24%), Positives = 47/98 (47%)
 Frame = +1

Query: 373 FYRMFFNFEKI*KILKTGAYFKYVKLYWLSRFSIHTLFLVLSILKLYLQVIRFTVFRHER 552
           F  ++F  E + +  + GA F ++ +Y L  FS + L  +  +L L   ++ +      +
Sbjct: 17  FLAIYFLDEYVDRWFRFGATFLFLLIYILKYFSNYRLLFIFLLLALCDGLLVYYEIPFLK 76

Query: 553 NLI*IIN*LSYVPLRLFSLGSLSKSKEIVTKILTFIMV 666
            +I  +  L+Y+ + L    SLSK K  +  +L  I +
Sbjct: 77  KIIYTVRILAYLNIILLIAPSLSKLKLNLFTVLISIFI 114


>UniRef50_Q4GYB6 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 133

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -1

Query: 370 ILHVLYCVSV--VLYHFIFYIFLSNY*FHFSYNVEYPFSVLTKYLLFSY 230
           +L VLY  S   +LYHF F   L    +HFS+   Y F +L+ +LLF +
Sbjct: 60  VLFVLYHFSFRFILYHFSFRFIL----YHFSFRFIYYFILLSFHLLFYF 104


>UniRef50_Q4GYC1 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 111

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -1

Query: 421 FLIFFIFFQS*KTCGKTILHVLYCVSVVL-YHFIFYIFLSNY*FHFSYNVEYPFSVLTKY 245
           F +F +F        K  L +  C    L YHFIF   +    +HFS+   Y F +L  +
Sbjct: 22  FFLFLLFHFECPYVSKRFLLIEDCPWQFLSYHFIFLSLVLFVLYHFSFRFIYYFILLLFH 81

Query: 244 LLFSY 230
           LLF +
Sbjct: 82  LLFYF 86


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 622,656,328
Number of Sequences: 1657284
Number of extensions: 11236759
Number of successful extensions: 19916
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19901
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)