Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1806
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    28   1.6  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    27   2.9  
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple...    26   6.6  
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    25   8.7  

>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 126 FKILMDVWSDNFYL*FRIDRTLNVITFYLLHVFLFCSNVL 7
           F++LM VW DNF   F   + +++I   +  ++ F S +L
Sbjct: 810 FEVLMTVWCDNFVY-FSNFKNISIICIAMTKIYSFDSPLL 848


>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 140  KFIINLKF*WMSGLTIFI 87
            KF++ LKF W+S L +FI
Sbjct: 991  KFLLGLKFYWVSALILFI 1008


>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
           subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 240 CLVINNYKNILYSLYQ*NGF 181
           C+ IN Y N+  SL Q NGF
Sbjct: 13  CIRINGYNNMRRSLLQRNGF 32


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 657 KSKYFSNYFFAFG*GT 610
           KSKY +N F+A+G GT
Sbjct: 286 KSKYGANLFYAYGPGT 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,520
Number of Sequences: 5004
Number of extensions: 54438
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)