Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1805
         (697 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   0.45 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   0.45 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    25   0.59 
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    23   2.4  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    23   2.4  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    23   2.4  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   7.3  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 566  KYLLDIDINKKSIKNNTTTISPIYNSLSNKNFHVFFMFN 450
            KYL  ID NK+        I+     L NK+   FFMFN
Sbjct: 1242 KYLYPIDENKEE----KARIAKELIELRNKSVFAFFMFN 1276


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 566  KYLLDIDINKKSIKNNTTTISPIYNSLSNKNFHVFFMFN 450
            KYL  ID NK+        I+     L NK+   FFMFN
Sbjct: 1242 KYLYPIDENKEE----KARIAKELIELRNKSVFAFFMFN 1276


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +1

Query: 184 NCNLNKLLYNIAKACTLYRKIISSIL*KYHYSNILFYSFLFILTSSSINRNLIFTFLESL 363
           N   N L YN  K C   R ++  +L       IL + F  ++ + ++N +++F F  + 
Sbjct: 41  NIRKNGLNYNFTKKCYFLRMVLIDLL---IVGCILKHIFNILMKNVTLN-DVVFIFCSAP 96

Query: 364 ILKNLL 381
           I+  +L
Sbjct: 97  IIITIL 102


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +1

Query: 274 YSNILFYSFLFILTSSS----INRNLIFTFLESLILKNLLIELDTVYAVGNTINYF 429
           Y+ +  YS   I T+ +    IN+ LIF     ++   L++ L T  A G  I  F
Sbjct: 65  YTLLSVYSLFRIATNENNSLVINKRLIFIECFVMMALTLIVTLFTFLARGTLIKSF 120


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +1

Query: 199 KLLYNIAKACTLYRKIISSIL*--KYHYSNILFYSFLFILTSSSINRNLIFTFL 354
           K  Y +     L  ++IS  L     H  +      LF ++SSS N  ++F+FL
Sbjct: 193 KTAYYLISFALLIMRLISVCLCGASVHSESSKVLPLLFSVSSSSYNCEVLFSFL 246


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +1

Query: 274 YSNILFYSFLFILTSSS----INRNLIFTFLESLILKNLLIELDTVYAVGNTINYF 429
           Y+ +  YS   I T+ +    IN+ LIF     ++   L++ L T  A G  I  F
Sbjct: 65  YTLLSVYSLFRIATNENNSLVINKRLIFIECFVMMALTLIVTLFTFLARGTLIKSF 120


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 502 QFIIHFQTKIFMFFLCLI 449
           Q ++   T +  FFLCLI
Sbjct: 287 QVVLMLGTVVLSFFLCLI 304


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,704
Number of Sequences: 336
Number of extensions: 3335
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)