Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1805
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   1.9  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    27   2.6  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   4.5  
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    25   7.8  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   7.8  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   7.8  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 229  TLYRKIISSIL*KYHYSNILFYSFLFILTSSSINR 333
            TL+ +I+S I  K HY +  F + LF++T   +++
Sbjct: 1056 TLFARILSLIGGKLHYGHPDFINVLFMITRGGVSK 1090


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 239 LYNVQALAMLYKSLLRLQLSIHIANFLFGYNFFLHISRE 123
           + N+   +  Y+ ++ L L+ HI     G  F LH  RE
Sbjct: 545 IQNIGPDSRSYRGIVHLHLAYHIVRIAMGRPFLLHRLRE 583


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 545 INKKSIKNNTTTISPIYNSLSNKNFH 468
           +NK S+ NN +T++P   SL +   H
Sbjct: 362 VNKYSLGNNVSTVNPFSKSLYDIGLH 387


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -3

Query: 413 LPTAYTVSSSINKFFNINDSKNVKIKFLFIDELVRINKNE*NRIFE 276
           +PT ++V    +     N+  +  +K  + DELV +  +E   +F+
Sbjct: 236 MPTLFSVKRYSDALLRQNEQLHRNVKINYKDELVEVKGSERKAVFK 281


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +1

Query: 319 SSINRNLI--FTFLESLILKNLLIELDTVYAVG 411
           S  NR LI  F F  S IL NLLI   TV+  G
Sbjct: 839 SKKNRFLINLFRFSFSFILYNLLISTSTVFFAG 871


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -3

Query: 413 LPTAYTVSSSINKFFNINDSKNVKIKFLFIDELVR 309
           +P  +++ +S+N   ++  S N  I   +IDEL+R
Sbjct: 617 IPQLFSIFTSLNHCKSLISSDNAAILGTYIDELMR 651


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,471
Number of Sequences: 5004
Number of extensions: 51146
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)