Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1805
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0066 - 11081446-11081544,11081639-11081846,11083122-110832...    28   6.2  
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    28   8.1  

>06_02_0066 -
           11081446-11081544,11081639-11081846,11083122-11083257,
           11083339-11083541,11083616-11083765,11083848-11083964,
           11084623-11085119
          Length = 469

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/75 (21%), Positives = 34/75 (45%)
 Frame = +1

Query: 202 LLYNIAKACTLYRKIISSIL*KYHYSNILFYSFLFILTSSSINRNLIFTFLESLILKNLL 381
           +L+ +   C      + S++ K   S  +F+SF  +L      +  ++TF   LI   + 
Sbjct: 133 MLFLLVVDCLFLSNSLRSLIHKREASVAIFFSFDDMLMEGQWEKKAVYTFYLELISDLVH 192

Query: 382 IELDTVYAVGNTINY 426
           + L  ++ +   +NY
Sbjct: 193 LSLYMLFFIAIFLNY 207


>09_06_0147 +
           21195222-21195377,21195471-21195522,21196842-21204362,
           21204453-21205031,21205176-21205484,21205638-21205718,
           21205971-21206279,21207430-21207816,21207964-21208767,
           21208856-21209218,21209437-21209667,21209934-21210278,
           21210494-21210712,21210759-21210815,21210978-21211322,
           21211538-21211756,21211803-21211859,21212022-21212366,
           21212584-21212814,21213100-21213458
          Length = 4322

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = -3

Query: 209 YKSLLRLQLSIHIANFLFGYNFFLHISREI 120
           YKSLLRLQ S H     +    FL  SREI
Sbjct: 45  YKSLLRLQASTHAPVPFYDGPTFLEESREI 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,862,415
Number of Sequences: 37544
Number of extensions: 217322
Number of successful extensions: 413
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)