Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1805
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006832-5|AAF39998.1|  513|Caenorhabditis elegans Hypothetical ...    32   0.45 
Z34800-3|CAA84322.2|  722|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U53150-8|AAA96128.2|  378|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide tr...    27   9.7  
U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-li...    27   9.7  
AF000418-1|AAC39119.1|  796|Caenorhabditis elegans low-affinity ...    27   9.7  

>AC006832-5|AAF39998.1|  513|Caenorhabditis elegans Hypothetical
           protein ZK355.1 protein.
          Length = 513

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = -3

Query: 242 FLYNVQALAMLYKSLLRLQLSIHIANFLFGYNFFLHISREIIILI 108
           F+Y ++ L +L+ SL     ++  ANFLF  +F +H+  + ++ I
Sbjct: 389 FVYKLKELEVLFGSLTIRNTTLKNANFLFYLSFIVHLEEDHVMQI 433


>Z34800-3|CAA84322.2|  722|Caenorhabditis elegans Hypothetical
           protein F45H7.2b protein.
          Length = 722

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 536 KSIKNNTTTISPIYNSLSNKNFHVFFMFNNEYYSHK 429
           KS K   +  +   NSL NK      MFN+ YY+H+
Sbjct: 44  KSTKTTNSNSTSNSNSLDNKKTDNISMFNDGYYTHE 79


>U53150-8|AAA96128.2|  378|Caenorhabditis elegans Hypothetical
           protein F20A1.2 protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
 Frame = -1

Query: 535 RVLKTIPPQYHQFIIHFQTKIFMFFLCLI----MNTIVTRNS*LYYPLH-----TLYPVQ 383
           R L   PPQ +  I+ F   +  FF  +I    +N I  ++  L+   H     T    +
Sbjct: 46  RQLANSPPQLYPAILAFLDTLLCFFFLMIFVVDVNMIYNKSEYLFLLFHRYIIVTFCTAK 105

Query: 382 LINFLISMILKM*KLNSY 329
           L+ FLI  +L +  L  Y
Sbjct: 106 LVQFLIPYMLMLGTLERY 123


>U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide
           transporter protein 2 protein.
          Length = 835

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 617 CKCSKFSSIHSIMLFRRKYLLDIDINKKSIKNNTTTISP 501
           C  +  S IH  +L   KYL +   NK  I N  TT SP
Sbjct: 446 CTITVMSGIHKRVLPHDKYLHEDKKNKSGIYNLFTTKSP 484


>U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical
           protein F31D5.4 protein.
          Length = 989

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/69 (23%), Positives = 35/69 (50%)
 Frame = +1

Query: 184 NCNLNKLLYNIAKACTLYRKIISSIL*KYHYSNILFYSFLFILTSSSINRNLIFTFLESL 363
           N   N  LY+  +   L R+   +++  YH+  +LFY F  + ++  ++ ++  T + ++
Sbjct: 711 NSLANSRLYSYVRGHNLARRDFLALI--YHFDLLLFYVFFTVFSNQDVSGDMC-TAMAAV 767

Query: 364 ILKNLLIEL 390
           +   LL  L
Sbjct: 768 MYALLLCSL 776


>AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-like
           protein MTH-2 protein.
          Length = 971

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/69 (23%), Positives = 35/69 (50%)
 Frame = +1

Query: 184 NCNLNKLLYNIAKACTLYRKIISSIL*KYHYSNILFYSFLFILTSSSINRNLIFTFLESL 363
           N   N  LY+  +   L R+   +++  YH+  +LFY F  + ++  ++ ++  T + ++
Sbjct: 693 NSLANSRLYSYVRGHNLARRDFLALI--YHFDLLLFYVFFTVFSNQDVSGDMC-TAMAAV 749

Query: 364 ILKNLLIEL 390
           +   LL  L
Sbjct: 750 MYALLLCSL 758


>AF000418-1|AAC39119.1|  796|Caenorhabditis elegans low-affinity
           peptide transporter protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 617 CKCSKFSSIHSIMLFRRKYLLDIDINKKSIKNNTTTISP 501
           C  +  S IH  +L   KYL +   NK  I N  TT SP
Sbjct: 407 CTITVMSGIHKRVLPHDKYLHEDKKNKSGIYNLFTTKSP 445


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,373,526
Number of Sequences: 27780
Number of extensions: 271619
Number of successful extensions: 779
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)