Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1804
         (715 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    23   1.9  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    23   3.3  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    22   5.7  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   7.5  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   7.5  

>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 162 IGNQAHLSYYCFSHINCVCWC 100
           I +  HL   C+S I  V WC
Sbjct: 309 IFDSIHLCDVCYSTIGTVSWC 329


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 497 FFCSLIQNCLT 465
           FFCSL+  CLT
Sbjct: 257 FFCSLVALCLT 267


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 525 FICIYTFQVIFLFINSKLFNISNG 454
           F+C+Y F +I L I   L  +  G
Sbjct: 290 FLCLYLFLIITLTIYGLLSQLQAG 313


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 558 VQKIGTKKHCIFICIYTFQVIFLFI 484
           V  +GT     F+C+  F+V  L+I
Sbjct: 289 VLMLGTVVLSFFLCLIPFRVFILWI 313


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = -2

Query: 606 YTIPLSSFEVF*LFTCVQKIGTKKHCIFICIYT-FQVIFLFIN---SKLFNISNGL*III 439
           +TI  S  + F  F C  +   + + IFI +   F VI L  N   +++  + + L I+I
Sbjct: 72  WTILFSRSDFFQQFECDNEPKLRHYLIFIFVNVFFWVIILMSNYAFTRIILLKSVLEIVI 131

Query: 438 RDTR*FYSKQKY 403
            D    YS+  Y
Sbjct: 132 IDIE-IYSQFLY 142


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,599
Number of Sequences: 336
Number of extensions: 3556
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)